average.fdr |
Average a two-dimensional local false discovery rate |
CDF |
Compute FDR for general scenarios |
CDFmix |
Compute FDR for general scenarios |
DrawContourlines |
Draw and label a set of pre-calculated isolines |
EOC |
Estimated or empirical FDR, sensitivity, etc as a function of cutoff level |
FDR |
Compute FDR for general scenarios |
fdr1d |
Compute classical local false discovery rate |
fdr2d |
Compute two-dimensional local false discovery rate |
FDRp |
Estimated or empirical FDR, sensitivity, etc as a function of cutoff level |
MAsim |
Simulate two-sample microarray data |
OCshow |
Show one ore several OC curves graphically |
p0 |
Display functions for local fdr output |
PermNull |
Compute multiple parallel t-statistics |
plot.FDR.result |
Plot the empirical FDR as a function of the cutoff level |
plot.fdr1d.result |
Plot univariate local false discovery output |
plot.fdr2d.result |
Plotting the bivariate local false discovery results |
samplesize |
FDR as a function of sample size |
smooth1d |
Smoothing a vector of counts |
summary.fdr.result |
Display functions for local fdr output |
tMixture |
Fit a mixture of t-distributions |
TOC |
Theoretical FDR and sensitivity as a function of cutoff level |
topDE |
Display functions for local fdr output |
Tornadoplot |
Plotting the bivariate local false discovery results |
tstatistics |
Compute multiple parallel t-statistics |
Volcanoplot |
Plotting the bivariate local false discovery results |