read.cdf.env {affxparser}R Documentation

Creating an CDF environment using teh Fusion SDK

Description

This function parses a CDF file and creates a corresponding CDF environment using the Afymetrix Fusion SDK.

Usage

read.cdf.env(fname, complementary.logic = TRUE, verbose = 0)

Arguments

fname name of the CDF file.
complementary.logic is a sanity check performed where we require that the mm match for a pm probe should be exactly the complementary of the pm probe. This should be the case for all cdf files except very special custom files (and SNP chip files).
verbose how verbose do we want to be? 0 means no output, higher numbers is more verbose.

Value

A cdf envirornment, for details see the link below.

Note

~~further notes~~

Author(s)

James Bullard, bullard@stat.berkeley.edu and Kasper Daniel Hansen, khansen@stat.berkeley.edu

See Also

make.cdf.env from makecdfenv for the default approach to creating cdf environments as well as affxparserInfo for general information about the Fusion SDK.

Examples

## Not run: 
read.cdf.env("test.CDF")
## End(Not run)

[Package affxparser version 1.2.0 Index]