read.cdf.complete {affxparser}R Documentation

Parsing a CDF file using Affymetrix Fusion SDK

Description

This function parses a CDF file using the Affymetrix Fusion SDK.

Usage

read.cdf.complete(fname, verbose = 0)

Arguments

fname name of the CDF file.
verbose how verbose should the output be. 0 means no output, with higher numbers being more verbose.

Details

Value

A list with one component for each unit. Every component is again a list with three components

groups This is again a list with one component for each group (also called block). The information on each group is a list with 5 components, x, y, pbase, tbase, expos.
type type of the unit.
direction direction of the unit.

Note

Author(s)

James Bullard, bullard@stat.berkeley.edu and Kasper Daniel Hansen, khansen@stat.berkeley.edu

See Also

affxparserInfo for general information about the package/Fusion SDK and read.cdf.header for getting the header of a CDF file.

Examples

## Not run: 
read.cdf.complete("test.CDF")
## End(Not run)

[Package affxparser version 1.2.0 Index]