DoritProliferationAssay {prada} | R Documentation |
Specialized functions for Dorit Arlt's (DKFZ) proliferation assay project
splitWellName(x) readWellXML(filename, path=".", verbose=TRUE) collectdat(thedir, verbose=TRUE)
x |
Character of length 1 |
filename |
Character vector of length 1: filename |
path |
Character vector of length 1 |
verbose |
Logical vector of length 1 |
thedir |
Character. |
These functions are rather ideosyncratic for the particular format in which the EMBL's high contents screening microscope (Urban Liebel, Rainer Pepperkok) store its data, and how that data was transfered to the DKFZ for Dorit Arlt's proliferation assay. These functions are probably not of much interest beyond that.
readWellXML
reads an XML file with the data for one well
from Urban Liebel's (EMBL) HCS-microscope.
splitWellName
splits a file name string into its components.
collectdat
collects together data from the individual wells
into one big data frame.
Various.
Wolfgang Huber http://www.dkfz.de/abt0840/whuber
splitWellName("dorit10_3c_1-2--01-pDhfbr2_78k24_1E3Y1") sampdat <- readWellXML(file="dorit13_2c-1-2--13-Ytrail=3143937171.xml", path=system.file("extdata", package="prada")) sampdat