Proliferation assay data analysis


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User Guides and Package Vignettes

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Help Pages

analysePlate Apply a statistic to the data from each well in a plate
as.all Coercion without introduction of NAs
barploterrbar Barplot with error bars.
closeHtmlPage Open and close an HTML file for writing.
collectdat Specialized functions for Dorit Arlt's (DKFZ) proliferation assay project
colorramp Interpolate between colors
estimateCrosstalkPlate Estimate crosstalk between two color channels.
estimateCrosstalkWell Estimate crosstalk between two color channels.
getDye Extract the Dye name (CFP or YFP) from the clone ID by pattern matching
getElement Functions to extract atomic data types (numeric, character) and vectors from an XML tree
getPradaPar Set and query global parameters for functions in the prada package
getVector Functions to extract atomic data types (numeric, character) and vectors from an XML tree
histStack Stacked histogram
imageMap Write an HTML IMG tag together with a MAP image map.
mapSub2Plate Map subplate well ID and subplate ID to 96-well plate well ID
openHtmlPage Open and close an HTML file for writing.
plotPlate Plot a well statistic in false color representation.
readFCS Read an FCS 3.0 file
readFCSdata Auxiliary functions for readFCS
readFCSgetPar Auxiliary functions for readFCS
readFCSheader Auxiliary functions for readFCS
readFCStext Auxiliary functions for readFCS
readWellXML Specialized functions for Dorit Arlt's (DKFZ) proliferation assay project
saveeps Save the contents of the current graphics device to a file
savepdf Save the contents of the current graphics device to a file
savepng Save the contents of the current graphics device to a file
savetiff Save the contents of the current graphics device to a file
setPradaPars Set and query global parameters for functions in the prada package
shorth Midpoint of the shorth
splitWellName Specialized functions for Dorit Arlt's (DKFZ) proliferation assay project
sqr Square
statWellLocfit Calculate a statistic for the data from one well