DoritProliferationAssay {prada}R Documentation

Specialized functions for Dorit Arlt's (DKFZ) proliferation assay project

Description

Specialized functions for Dorit Arlt's (DKFZ) proliferation assay project

Usage

splitWellName(x)
readWellXML(filename, path=".", verbose=TRUE)
collectdat(thedir, verbose=TRUE)

Arguments

x Character of length 1
filename Character vector of length 1: filename
path Character vector of length 1
verbose Logical vector of length 1
thedir Character.

Details

These functions are rather ideosyncratic for the particular format in which the EMBL's high contents screening microscope (Urban Liebel, Rainer Pepperkok) store its data, and how that data was transfered to the DKFZ for Dorit Arlt's proliferation assay. These functions are probably not of much interest beyond that.

readWellXML reads an XML file with the data for one well from Urban Liebel's (EMBL) HCS-microscope.

splitWellName splits a file name string into its components.

collectdat collects together data from the individual wells into one big data frame.

Value

Various.

Author(s)

Wolfgang Huber http://www.dkfz.de/abt0840/whuber

See Also

Examples

  splitWellName("dorit10_3c_1-2--01-pDhfbr2_78k24_1E3Y1")
  sampdat <- readWellXML(file="dorit13_2c-1-2--13-Ytrail=3143937171.xml",
                   path=system.file("extdata", package="prada"))
  sampdat

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