goTools {goTools} | R Documentation |
The function EndNodeList
builds the default end node list used in
ontoCompare
EndNodeList() CustomEndNodeList(id,rank=1)
id |
Valid GO id: "GO:XXXXXXX". |
rank |
Number of levels of children of the GO DAG under id you want to add to your nodes list. |
EndNodeList
returns a vector of all GO ids 1 level below MF("GO:0003674"),
BP("GO:0008150") and CC("GO:0005575"). MF, BP and CC nodes are
included.
CustomEndNodeList
returns a vector of all GO ids children of
id
, rank
levels below it.
Yee Hwa (Jean) Yang, Agnes Paquet
# Examples use the probeID dataset. For description type ? probeID. library(GO) library(annotate) data(probeID) EndNodeList() MFendnode <- CustomEndNodeList("GO:0003674", rank=2) ontoCompare(affylist, probeType="hgu133a", endnode=MFendnode, goType="MF")