ecoligenome.operon {ecolitk} | R Documentation |
The known operon in the Escherichia coli genome.
data(ecoligenome.operon)
A data frame with 932 observations (genes) on the following 4 variables.
For some operons, the source of information specifies the existence of
regulating elements such as promoter, terminator, box, etc...
In those cases, the gene.name
is set to "Regulation"
,
and the gene.annotation
gives what kind of regulating element
it is. If volonteers, it would be neat to map those on the genome...
Besides that, not much to add. The data structure is fairly straightforward.
Built from the webpage: http://www.cib.nig.ac.jp/dda/backup/taitoh/ecoli.operon.html
library(Biobase) data(ecoligenome.operon) data(ecoligenomeSYMBOL2AFFY) ## something that might be useful when working with Affymetrix data: ## get the Affymetrix identifiers for the probe sets bundled in operons ## (see the vignette for more details) ecoligenome.operon$affyid <- unname(unlist(multiget(ecoligenome.operon$gene.name, ecoligenomeSYMBOL2AFFY)))