summary.bim {bim} | R Documentation |
Quick summary of Bayesian interval mapping samples.
summary.bim( object, ... ) summary.bim.model( object, ... ) summary.bim.qtl( object, ... )
object |
object of class bim (from run.bmapqtl ),
bim.model (from bim.model ), or bim.qtl (from
bim.qtl or bim.effects ) |
... |
additional arguments to summary |
Brian S. Yandell, yandell@stat.wisc.edu
http://www.stat.wisc.edu/~yandell/qtl/software/Bmapqtl
run.bmapqtl
,bim.model
,bim.qtl
,
bim.effects
data( verngeo.bim ) summary( verngeo.bim ) verngeo.model <- bim.model( verngeo.bim ) summary( verngeo.model ) ## estimate QTL density and locate peak(s) verngeo.qtl <- bim.qtl( verngeo.bim ) ## augment bim.qtl with estimates of effects verngeo.qtl <- bim.effects( verngeo.bim, qtl = verngeo.qtl ) ## same idea but with just one call verngeo.qtl <- bim.effects( verngeo.bim )