Bnapus {bim} | R Documentation |
Cross structure for complete Brassica napus data
Description
Contains genotypes and phenotypes for Brassica napus study, including 0-
4- and 8-week vernalization, survival, and 19 chromosomes.
Usage
data(Bnapus)
Format
See read.cross
in library(qtl)
for format.
Source
Thomas C. Osborn (mailto:tcosborn@facstaff.wisc.edu), Department of Agronomy,
UW-Madison (http://agronomy.wisc.edu).
References
http://www.stat.wisc.edu/~yandell/qtl/data/osborn/Bnapus
Ferreira ME, Satagopan J, Yandell BS, Williams PH, Osborn TC
(1995) Mapping loci controlling vernalization requirement and
flowering time in Brassica napus. Theor Appl Genet
90: 727-732. [original source and analysis]
JM Satagopan, BS Yandell, MA Newton and TC Osborn (1996)
Markov chain Monte Carlo approach to detect polygene loci
for complex traits. Genetics 144: 805-816.
http://www.genetics.org/cgi/content/abstract/144/2/805
[first MCMC for experimental crosses; analysis of B. napus N2=LG9; see
vern
data]
Kole C, Thorman CE, Karlsson BH, Palta JP, Gaffney P, Yandell
BS, Osborn TC (2001)
Comparative mapping of loci controlling winter survival and
related traits in oilseed Brassica rapa and B. napus.
Molecular Breeding 1: 329-339. [refined map and reanalysis]
See Also
read.cross
,plot.bim
Examples
data(Bnapus)
summary(Bnapus)
plot(Bnapus)
## Not run:
Bnapus.bim = run.bmapqtl(Bnapus,"log10flower8")
## End(Not run)