Tools for manipulating GO and microarrays.


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ALL Acute Lymphoblastic Leukemia Data from the Ritz Laboratory
Bdists Distance matrices for the BCR/ABL and NEG subgroups.
combGOGraph Combine GO Graphs
compCorrGraph A function to compute a correlation based graph from Gene Expression Data
compGdist A function to compute the distance between pairs of nodes in a graph.
distCGO Distances between GO graphs
distDGGO Distances between GO graphs
enumPairs Triad Functions
getGOCategory Functions to Access GO data.
getGOChildren Functions to Access GO data.
getGOParents Functions to Access GO data.
getGOTerm Functions to Access GO data.
GOHyperG Hypergeometric Tests for GO
GOLeaves Identify the leaves in a GO Graph
hasGOannote Check for GO annotation
idx2dimnames Index to Dimnames
isTriad Triad Functions
makeGOGraph Construct a GO Graph
Ndists Distance matrices for the BCR/ABL and NEG subgroups.
notConn Find genes that are not connected to the others.
oneGOGraph Build a GO graph for one identifier
reduce2Degreek Triad Functions
shortestPath Shortest Path Analysis
triad Triad Functions
triadCensus Triad Functions