DNAcopy-internal {DNAcopy} | R Documentation |
Internal functions of package DNAcopy.
changepoints(genomdat, data.type = "logratio", alpha = 0.01, nperm = 10000, window.size = NULL, overlap = 0.25, trim = 0.025, smooth.outliers = TRUE, smooth.region = 2, outlier.SD = 4, smooth.SD = 2, smooth.output = FALSE, undo.splits = "none", undo.prune = 0.05, undo.SD = 3, verbose = TRUE) changepoints.prune(genomdat, lseg, change.cutoff=0.05) changepoints.sdundo(genomdat, lseg, change.SD=3, trim=0.025) smooth.data(genomdat, smooth.region = 2, outlier.SD = 4, smooth.SD = 2, trim = 0.025) trimmed.variance(genomdat, trim=0.025) inflfact(trim)
These are not to be called directly by the user