splicegear


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as.data.frame.SpliceExprSet convert to a data.frame
as.data.frame.SpliceSites convert to a data.frame
barplot.SpliceSites barplot for SpliceSites
buildSpliceSites Functions to query PALSdb
eset Example data for splicegear
exprs,SpliceExprSet-method Class "SpliceExprSet"
exprs<-,SpliceExprSet-method Class "SpliceExprSet"
getFinalRatio functions to perform SPLICE
getPALSdbURL Functions to query PALSdb
getRelSignStrength functions to perform SPLICE
grid.expand.gp convenience functions for grid
grid.make.numeric2npc convenience functions for grid
grid.plot Class "SpliceExprSet"
grid.plot,Probes,missing-method Class "Probes"
grid.plot,Probes,SpliceSites-method Class "Probes"
grid.plot,SpliceExprSet,missing-method Class "SpliceExprSet"
grid.plot,SpliceSites,missing-method Class "SpliceExprSet"
grid.plot.Probes Plot splicegear objects
grid.plot.SpliceExprSet Class "SpliceExprSet"
grid.plot.SpliceSites Plot splicegear objects
grid.plot.SpliceSitesExprSet Plot splicegear objects
initialize Class "Probes"
initialize,Probes-method Class "Probes"
initialize,SpliceSites-method Class "SpliceSites"
isProbeOnSpliceSite Check the presence of probes on certain exons
isSpliceSiteOnProbe Check the presence of probes on certain exons
matchprobes2Probes create Probes object from matchprobes results
plot Class "Probes"
plot,Probes,missing-method Class "Probes"
plot,Probes,SpliceSites-method Class "Probes"
plot,Probes-method Class "Probes"
plot,SpliceExprSet,missing-method Class "SpliceExprSet"
plot,SpliceSites,missing-method Class "SpliceSites"
plot,SpliceSites-method Class "SpliceSites"
plot,SpliceSitesGenomic,missing-method Class "SpliceSitesGenomic"
plot,SpliceSitesGenomic-method Class "SpliceSitesGenomic"
plot.Probes plot a SpliceSites object
plot.SpliceExprSet plot a SpliceExprSet
plot.SpliceSites plot a SpliceSites object
plot.SpliceSitesGenomic Function to plot SpliceSitesGenomic objects
probes Example data for splicegear
Probes-class Class "Probes"
queryPALSdb Functions to query PALSdb
show Class "Probes"
show,Probes-method Class "Probes"
show,SpliceExprSet-method Class "SpliceExprSet"
show,SpliceSites-method Class "SpliceSites"
sort.SpliceExprSet A function to sort a SpliceExprSet
SpliceExprSet-class Class "SpliceExprSet"
spliceset Example data for splicegear
spliceSites Class "SpliceExprSet"
spliceSites,SpliceExprSet-method Class "SpliceExprSet"
SpliceSites-class Class "SpliceSites"
SpliceSitesGenomic-class Class "SpliceSitesGenomic"
split.SpliceSites split an instance of SpliceSites
spsites Example data for splicegear