isProbeOnSpliceSite {splicegear}R Documentation

Check the presence of probes on certain exons

Description

Return whether the probes are located on exons involved in (putative) alternative splicing or not.

Usage

isProbeOnSpliceSite(probes, spSites)
## isSpliceSiteOnProbe is not yet implemented

Arguments

probes object of class Probes
spSites object of class spliceSites

Details

Value

The returned value in a list of two vectors of mode logical of the same length:

isintypeI whether the probes are in a `type I' region or not.
isintypeII whether the probe are in a `type II' region or not.

Author(s)

Laurent

References

For details about `type I' and `type II', please refer to Huang Y.-H and Chen Y.-T and Lai J.-J. and Yang S.-T. and Yang U.-C., PALSdb: Putative Alternative Splicing database, Nucleic Acids Research, 2002, pages 186-190

Examples



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