This function takes a single column data frame, which is a
subset of the ranked data obtained from rankGenes()
function and gene sets,
and it returns plots visualising the density and the rugs of the ran ks.
plotRankDensity_intl( rankData, upSet, downSet = NULL, isInteractive = FALSE, textSize = 1.2 )
rankData | one column of the ranked gene expression matrix obtained from
the |
---|---|
upSet | GeneSet object, up regulated gene set |
downSet | GeneSet object, down regulated gene set |
isInteractive | Boolean, determin whether the returned plot is interactive |
textSize | numeric, set the size of text on the plot |
A ggplot object (optionally interactive) demonstrating the rank density along with rug plot
"GeneSet"