Pathway RespOnsive GENes for activity inference from gene expression

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Documentation for package ‘progeny’ version 1.10.0

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getModel Returns the Progeny Model
model_human_full The full human linear model underlying PROGENy
model_mouse_full The full mouse linear model underlying PROGENy
progeny Calculate PROGENy pathway scores from gene expression
progenyPerm Compute progeny pathway scores and assesses significance based on permutations
progenyScatter Calculate Progeny Scores with Permutations
saveProgenyPlots Function to save Progeny plots