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A C D E F H I J L M O P R S T V misc
| aes-utils | Generate ggplot aesthetic instructions |
| assay-method | ExperimentColorMap class |
| assayColorMap | ExperimentColorMap class |
| assayColorMap-method | ExperimentColorMap class |
| assayColorMap<- | ExperimentColorMap class |
| assayColorMap<--method | ExperimentColorMap class |
| assayNames-method | ExperimentColorMap class |
| assayNames<--method | ExperimentColorMap class |
| assays-method | ExperimentColorMap class |
| assays<--method | ExperimentColorMap class |
| checkColormapCompatibility | Check compatibility between ExperimentColorMap and SummarizedExperiment objects |
| class-utils | Set default slot values |
| class:ExperimentColorMap | ExperimentColorMap class |
| colData-method | ExperimentColorMap class |
| colData<--method | ExperimentColorMap class |
| colDataColorMap | ExperimentColorMap class |
| colDataColorMap-method | ExperimentColorMap class |
| colDataColorMap<- | ExperimentColorMap class |
| colDataColorMap<--method | ExperimentColorMap class |
| colDataPlotDefaults | Deprecated default functions |
| collapseBox | A collapsible box |
| colStatTableDefaults | Deprecated default functions |
| ColumnDataPlot | The ColumnDataPlot panel |
| ColumnDataPlot-class | The ColumnDataPlot panel |
| ColumnDataTable | The ColumnDataTable panel |
| ColumnDataTable-class | The ColumnDataTable panel |
| ColumnDotPlot-class | The ColumnDotPlot virtual class |
| ColumnTable-class | The ColumnTable class |
| ComplexHeatmapPlot | The ComplexHeatmapPlot panel |
| ComplexHeatmapPlot-class | The ComplexHeatmapPlot panel |
| createCustomPanels | Create custom panels |
| createCustomPlot | Create custom panels |
| createCustomTable | Create custom panels |
| createLandingPage | Create a landing page |
| dataframe-utils | Class utilities |
| defaults | Deprecated default functions |
| DotPlot-class | The DotPlot virtual class |
| ExperimentColorMap | ExperimentColorMap class |
| ExperimentColorMap-class | ExperimentColorMap class |
| featAssayPlotDefaults | Deprecated default functions |
| FeatureAssayPlot | The FeatureAssayPlot panel |
| FeatureAssayPlot-class | The FeatureAssayPlot panel |
| filterDT | Filter 'DT' columns |
| filterDTColumn | Filter 'DT' columns |
| heatMapPlotDefaults | Deprecated default functions |
| initialize-method | The ColumnDataPlot panel |
| initialize-method | The ColumnDataTable panel |
| initialize-method | The ColumnDotPlot virtual class |
| initialize-method | The ColumnTable class |
| initialize-method | The ComplexHeatmapPlot panel |
| initialize-method | The DotPlot virtual class |
| initialize-method | The FeatureAssayPlot panel |
| initialize-method | The Panel virtual class |
| initialize-method | The ReducedDimensionPlot panel |
| initialize-method | The RowDataPlot panel |
| initialize-method | The RowDataTable panel |
| initialize-method | The RowDotPlot virtual class |
| initialize-method | The RowTable class |
| initialize-method | The SampleAssayPlot panel |
| initialize-method | The Table class |
| interface-generics | Generics for the panel interface |
| iSEE | iSEE: interactive SummarizedExperiment Explorer |
| iSEE-pkg | iSEE: interactive SummarizedExperiment/SingleCellExperiment Explorer |
| iSEEOptions | Default panel options |
| jitterSquarePoints | Jitter points for categorical variables |
| jitterViolinPoints | Jitter points for categorical variables |
| lassoPoints | Find rows of data within a closed lasso |
| manage_commands | Manage commands to be evaluated |
| metadata-plot-generics | Generics for row/column metadata plots |
| multi-select-generics | Generics for controlling multiple selections |
| observer-generics | Generic for the panel observers |
| output-generics | Generics for Panel outputs |
| Panel-class | The Panel virtual class |
| plot-generics | Plotting generics |
| plot-utils | Process faceting choices |
| redDimPlotDefaults | Deprecated default functions |
| ReducedDimensionPlot | The ReducedDimensionPlot panel |
| ReducedDimensionPlot-class | The ReducedDimensionPlot panel |
| rowData-method | ExperimentColorMap class |
| rowData<--method | ExperimentColorMap class |
| rowDataColorMap | ExperimentColorMap class |
| rowDataColorMap-method | ExperimentColorMap class |
| rowDataColorMap<- | ExperimentColorMap class |
| rowDataColorMap<--method | ExperimentColorMap class |
| RowDataPlot | The RowDataPlot panel |
| RowDataPlot-class | The RowDataPlot panel |
| rowDataPlotDefaults | Deprecated default functions |
| RowDataTable | The RowDataTable panel |
| RowDataTable-class | The RowDataTable panel |
| RowDotPlot-class | The RowDotPlot virtual class |
| rowStatTableDefaults | Deprecated default functions |
| RowTable-class | The RowTable class |
| sampAssayPlotDefaults | Deprecated default functions |
| SampleAssayPlot | The SampleAssayPlot panel |
| SampleAssayPlot-class | The SampleAssayPlot panel |
| setup-generics | Generics for setting up parameters |
| single-select-generics | Generics for controlling single selections |
| subsetPointsByGrid | Subset points for faster plotting |
| synchronizeAssays | Synchronize assay colormaps to match those in a SummarizedExperiment |
| Table-class | The Table class |
| table-generics | Generics for table construction |
| track-utils | Track internal events |
| visual-parameters-generics | Generics for visual parameters |
| .addFacets | Process faceting choices |
| .addMultiSelectionPlotCommands | Add multiple selection plotting commands |
| .allowableXAxisChoices | Generics for row/column metadata plots |
| .allowableXAxisChoices-method | The ColumnDataPlot panel |
| .allowableXAxisChoices-method | The RowDataPlot panel |
| .allowableYAxisChoices | Generics for row/column metadata plots |
| .allowableYAxisChoices-method | The ColumnDataPlot panel |
| .allowableYAxisChoices-method | The RowDataPlot panel |
| .buildAes | Generate ggplot aesthetic instructions |
| .buildLabs | Generate ggplot title and label instructions |
| .cacheCommonInfo | Generics for setting up parameters |
| .cacheCommonInfo-method | The ColumnDataTable panel |
| .cacheCommonInfo-method | The ColumnDotPlot virtual class |
| .cacheCommonInfo-method | The ComplexHeatmapPlot panel |
| .cacheCommonInfo-method | The DotPlot virtual class |
| .cacheCommonInfo-method | The Panel virtual class |
| .cacheCommonInfo-method | The ReducedDimensionPlot panel |
| .cacheCommonInfo-method | The RowDataTable panel |
| .cacheCommonInfo-method | The RowDotPlot virtual class |
| .colorByNoneDotPlotField | Plotting generics |
| .colorByNoneDotPlotField-method | The DotPlot virtual class |
| .colorByNoneDotPlotScale | Plotting generics |
| .colorByNoneDotPlotScale-method | The DotPlot virtual class |
| .createObservers | Generic for the panel observers |
| .createObservers-method | The ColumnDataPlot panel |
| .createObservers-method | The ColumnDotPlot virtual class |
| .createObservers-method | The ColumnTable class |
| .createObservers-method | The ComplexHeatmapPlot panel |
| .createObservers-method | The DotPlot virtual class |
| .createObservers-method | The FeatureAssayPlot panel |
| .createObservers-method | The Panel virtual class |
| .createObservers-method | The ReducedDimensionPlot panel |
| .createObservers-method | The RowDataPlot panel |
| .createObservers-method | The RowDotPlot virtual class |
| .createObservers-method | The RowTable class |
| .createObservers-method | The SampleAssayPlot panel |
| .createObservers-method | The Table class |
| .createProtectedParameterObservers | Define parameter observers |
| .createUnprotectedParameterObservers | Define parameter observers |
| .defineDataInterface | Generics for the panel interface |
| .defineDataInterface-method | The ColumnDataPlot panel |
| .defineDataInterface-method | The ComplexHeatmapPlot panel |
| .defineDataInterface-method | The FeatureAssayPlot panel |
| .defineDataInterface-method | The Panel virtual class |
| .defineDataInterface-method | The ReducedDimensionPlot panel |
| .defineDataInterface-method | The RowDataPlot panel |
| .defineDataInterface-method | The SampleAssayPlot panel |
| .defineInterface | Generics for the panel interface |
| .defineInterface-method | The ColumnDotPlot virtual class |
| .defineInterface-method | The ColumnTable class |
| .defineInterface-method | The ComplexHeatmapPlot panel |
| .defineInterface-method | The Panel virtual class |
| .defineInterface-method | The RowDotPlot virtual class |
| .defineInterface-method | The RowTable class |
| .defineOutput | Generics for Panel outputs |
| .defineOutput-method | The ComplexHeatmapPlot panel |
| .defineOutput-method | The DotPlot virtual class |
| .defineOutput-method | The Table class |
| .defineVisualColorInterface | Generics for visual parameters |
| .defineVisualColorInterface-method | The ColumnDotPlot virtual class |
| .defineVisualColorInterface-method | The RowDotPlot virtual class |
| .defineVisualFacetInterface | Generics for visual parameters |
| .defineVisualFacetInterface-method | The ColumnDotPlot virtual class |
| .defineVisualFacetInterface-method | The RowDotPlot virtual class |
| .defineVisualOtherInterface | Generics for visual parameters |
| .defineVisualOtherInterface-method | The DotPlot virtual class |
| .defineVisualPointInterface | Generics for visual parameters |
| .defineVisualPointInterface-method | The ColumnDotPlot virtual class |
| .defineVisualPointInterface-method | The RowDotPlot virtual class |
| .defineVisualShapeInterface | Generics for visual parameters |
| .defineVisualShapeInterface-method | The ColumnDotPlot virtual class |
| .defineVisualShapeInterface-method | The RowDotPlot virtual class |
| .defineVisualSizeInterface | Generics for visual parameters |
| .defineVisualSizeInterface-method | The ColumnDotPlot virtual class |
| .defineVisualSizeInterface-method | The RowDotPlot virtual class |
| .defineVisualTextInterface | Generics for visual parameters |
| .defineVisualTextInterface-method | The DotPlot virtual class |
| .emptyDefault | Set default slot values |
| .exportOutput | Generics for Panel outputs |
| .exportOutput-method | The DotPlot virtual class |
| .exportOutput-method | The Panel virtual class |
| .exportOutput-method | The Table class |
| .findAtomicFields | Class utilities |
| .fullName | Get panel names |
| .fullName-method | The ColumnDataPlot panel |
| .fullName-method | The ColumnDataTable panel |
| .fullName-method | The ComplexHeatmapPlot panel |
| .fullName-method | The FeatureAssayPlot panel |
| .fullName-method | The ReducedDimensionPlot panel |
| .fullName-method | The RowDataPlot panel |
| .fullName-method | The RowDataTable panel |
| .fullName-method | The SampleAssayPlot panel |
| .generateDotPlot | Plotting generics |
| .generateDotPlot-method | The DotPlot virtual class |
| .generateDotPlotData | Plotting generics |
| .generateDotPlotData-method | The ColumnDataPlot panel |
| .generateDotPlotData-method | The FeatureAssayPlot panel |
| .generateDotPlotData-method | The ReducedDimensionPlot panel |
| .generateDotPlotData-method | The RowDataPlot panel |
| .generateDotPlotData-method | The SampleAssayPlot panel |
| .generateOutput | Generics for Panel outputs |
| .generateOutput-method | The ComplexHeatmapPlot panel |
| .generateOutput-method | The DotPlot virtual class |
| .generateOutput-method | The Table class |
| .generateTable | Generics for table construction |
| .generateTable-method | The ColumnDataTable panel |
| .generateTable-method | The RowDataTable panel |
| .getCachedCommonInfo | Set and get cached commons |
| .getEncodedName | Get panel names |
| .getFullName | Get panel names |
| .getPanelColor | Get panel colors |
| .hideInterface | Generics for the panel interface |
| .hideInterface-method | The ColumnDataTable panel |
| .hideInterface-method | The ColumnDotPlot virtual class |
| .hideInterface-method | The ColumnTable class |
| .hideInterface-method | The ComplexHeatmapPlot panel |
| .hideInterface-method | The DotPlot virtual class |
| .hideInterface-method | The Panel virtual class |
| .hideInterface-method | The RowDataTable panel |
| .hideInterface-method | The RowDotPlot virtual class |
| .hideInterface-method | The RowTable class |
| .hideInterface-method | The Table class |
| .multiSelectionActive | Generics for controlling multiple selections |
| .multiSelectionActive-method | The DotPlot virtual class |
| .multiSelectionActive-method | The Panel virtual class |
| .multiSelectionActive-method | The Table class |
| .multiSelectionAvailable | Generics for controlling multiple selections |
| .multiSelectionAvailable-method | The Panel virtual class |
| .multiSelectionClear | Generics for controlling multiple selections |
| .multiSelectionClear-method | The DotPlot virtual class |
| .multiSelectionClear-method | The Panel virtual class |
| .multiSelectionCommands | Generics for controlling multiple selections |
| .multiSelectionCommands-method | The DotPlot virtual class |
| .multiSelectionCommands-method | The Table class |
| .multiSelectionDimension | Generics for controlling multiple selections |
| .multiSelectionDimension-method | The ColumnDotPlot virtual class |
| .multiSelectionDimension-method | The ColumnTable class |
| .multiSelectionDimension-method | The DotPlot virtual class |
| .multiSelectionDimension-method | The Panel virtual class |
| .multiSelectionDimension-method | The RowDotPlot virtual class |
| .multiSelectionDimension-method | The RowTable class |
| .multiSelectionInvalidated | Generics for controlling multiple selections |
| .multiSelectionInvalidated-method | The Panel virtual class |
| .multiSelectionRestricted | Generics for controlling multiple selections |
| .multiSelectionRestricted-method | The DotPlot virtual class |
| .multiSelectionRestricted-method | The Panel virtual class |
| .panelColor | Get panel colors |
| .panelColor-method | The ColumnDataPlot panel |
| .panelColor-method | The ColumnDataTable panel |
| .panelColor-method | The ComplexHeatmapPlot panel |
| .panelColor-method | The FeatureAssayPlot panel |
| .panelColor-method | The ReducedDimensionPlot panel |
| .panelColor-method | The RowDataPlot panel |
| .panelColor-method | The RowDataTable panel |
| .panelColor-method | The SampleAssayPlot panel |
| .prioritizeDotPlotData | Plotting generics |
| .prioritizeDotPlotData-method | The DotPlot virtual class |
| .processMultiSelections | Process multiple selections |
| .refineParameters | Generics for setting up parameters |
| .refineParameters-method | The ColumnDataPlot panel |
| .refineParameters-method | The ColumnDataTable panel |
| .refineParameters-method | The ColumnDotPlot virtual class |
| .refineParameters-method | The ColumnTable class |
| .refineParameters-method | The ComplexHeatmapPlot panel |
| .refineParameters-method | The DotPlot virtual class |
| .refineParameters-method | The FeatureAssayPlot panel |
| .refineParameters-method | The Panel virtual class |
| .refineParameters-method | The ReducedDimensionPlot panel |
| .refineParameters-method | The RowDataPlot panel |
| .refineParameters-method | The RowDataTable panel |
| .refineParameters-method | The RowDotPlot virtual class |
| .refineParameters-method | The RowTable class |
| .refineParameters-method | The SampleAssayPlot panel |
| .renderOutput | Generics for Panel outputs |
| .renderOutput-method | The ComplexHeatmapPlot panel |
| .renderOutput-method | The DotPlot virtual class |
| .renderOutput-method | The Panel virtual class |
| .renderOutput-method | The Table class |
| .requestActiveSelectionUpdate | Reactive manipulations for Panel output |
| .requestCleanUpdate | Reactive manipulations for Panel output |
| .requestUpdate | Reactive manipulations for Panel output |
| .retrieveOutput | Reactive manipulations for Panel output |
| .setCachedCommonInfo | Set and get cached commons |
| .singleSelectionDimension | Generics for controlling single selections |
| .singleSelectionDimension-method | The ColumnDotPlot virtual class |
| .singleSelectionDimension-method | The ColumnTable class |
| .singleSelectionDimension-method | The Panel virtual class |
| .singleSelectionDimension-method | The RowDotPlot virtual class |
| .singleSelectionDimension-method | The RowTable class |
| .singleSelectionSlots | Generics for controlling single selections |
| .singleSelectionSlots-method | The DotPlot virtual class |
| .singleSelectionSlots-method | The FeatureAssayPlot panel |
| .singleSelectionSlots-method | The Panel virtual class |
| .singleSelectionSlots-method | The SampleAssayPlot panel |
| .singleSelectionValue | Generics for controlling single selections |
| .singleSelectionValue-method | The DotPlot virtual class |
| .singleSelectionValue-method | The Panel virtual class |
| .singleSelectionValue-method | The Table class |
| .textEval | Manage commands to be evaluated |
| .trackMultiSelection | Track internal events |
| .trackRelinkedSelection | Track internal events |
| .trackSingleSelection | Track internal events |
| .trackUpdate | Track internal events |
| .whichGroupable | Class utilities |
| .whichNumeric | Class utilities |
| [[-method | The Panel virtual class |
| [[<--method | The Panel virtual class |