Application of gene classifiers

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Documentation for package ‘geneClassifiers’ version 1.12.0

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bracket-method Extract
ClassifierParameters An S4 class to store classifier parameters.
ClassifierResults An S4 class to store classifier results.
dim-method Dimensions of an Object
exampleMAS5 Example MAS5.0 ExpressionSet
FixedExpressionData An S4 class to store classifier parameters.
getBatchCorrection Obtain the batch correction status for a classifier result.
getBatchCorrection-method Obtain the batch correction status for a classifier result.
getCitations Obtain citations to the classifier
getCitations-method Obtain citations to the classifier
getClassifications Obtain classifier classifications.
getClassifications-method Obtain classifier classifications.
getClassifier Obtain a classifier definition.
getClassifier-method Obtain a classifier definition.
getDecisionBoundaries Obtain the decision boundaries defined for the classifier.
getDecisionBoundaries-method Obtain the decision boundaries defined for the classifier.
getDescription Obtain classifiers' description.
getDescription-method Obtain classifiers' description.
getEventChain Obtain classifiers' event chain.
getEventChain-method Obtain classifiers' event chain.
getIntercept Obtain classifiers' intercept.
getIntercept-method Obtain classifiers' intercept.
getMeans Obtain classifiers' reference means.
getMeans-method Obtain classifiers' reference means.
getName Obtain object names.
getName-method Obtain object names.
getNormalizationMethod Obtain normalization method
getNormalizationMethod-method Obtain normalization method
getNormalizationMethods Obtain normalization method
getProbeNames Obtain probe-set names.
getProbeNames-method Obtain probe-set names.
getScores Obtain classifier score.
getScores-method Obtain classifier score.
getSds Obtain classifiers' reference standard deviations.
getSds-method Obtain classifiers' reference standard deviations.
getTargetValue Obtain the targetValue
getTargetValue-method Obtain the targetValue
getTrainingData Obtain classifier training data.
getTrainingData-method Obtain classifier training data.
getWeightingType Obtain the weighting type used to obtain a classifier result.
getWeightingType-method Obtain the weighting type used to obtain a classifier result.
getWeightingTypes Obtain the weighting type used to obtain a classifier result.
getWeights Obtain classifier weights.
getWeights-method Obtain classifier weights.
runClassifier Perform classification.
runClassifier-method Perform classification.
setNormalizationMethod Prepare data.
showClassifierList Show classifier names and descriptions.
[-method Extract
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