Condition specific detection from expression data


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Documentation for package ‘SpeCond’ version 1.42.0

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createParameterMatrix Create or Modify the SpeCond argument parameters
expressionSpeCondExample The expression matrix example used in the SpeCond package
expSetSpeCondExample An ExpressionSet example object used in the SpeCond package
fitNoPriorWithExclusion Fit the expression values profile with a mixture of normal components ignoring outliers
fitPrior Fit the expression value profiles with a mixture of normal components
getDefaultParameter Get the default parameter to use SpeCond function
getFullHtmlSpeCondResult Visualisation function of the SpeCond analysis results
getGeneHtmlPage Visualise for each gene the condition-specific detection result from SpeCond
getMatrixFromExpressionSet Obtain the expression matrix from an ExpressionSet object
getProfile Create the condition-specific profile of specific matrix result from SpeCond
getSpecificOutliersStep1 Detect the condition-specific as outliers in for the first step on the SpeCond procedure
getSpecificResult Detect the condition-specific genes for the second step on the SpeCond procedure
simulatedSpeCondData An example of simulated expression matrix used in the SpeCond package
SpeCond The condition-specific detection function
writeGeneResult Write a condition-specific analysis result text file
writeSpeCondResult Write in text files the main result of the SpeCond function
writeUniqueProfileSpecificResult Write the specific profiles from the SpeCond analysis