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| All_Steps_Interface | RNASeqEnvironmentSet |
| All_Steps_Interface_CMD | All_Steps_Interface_CMD |
| CheckToolAll | CheckToolAll |
| RNASeqDifferentialAnalysis | RNASeqDifferentialAnalysis |
| RNASeqDifferentialAnalysis_CMD | RNASeqDifferentialAnalysis_CMD |
| RNASeqEnvironmentSet | RNASeqEnvironmentSet |
| RNASeqEnvironmentSet_CMD | RNASeqEnvironmentSet_CMD |
| RNASeqGoKegg | RNASeqGoKegg |
| RNASeqGoKegg_CMD | RNASeqGoKegg_CMD |
| RNASeqQualityAssessment | RNASeqQualityAssessment |
| RNASeqQualityAssessment_CMD | RNASeqQualityAssessment_CMD |
| RNASeqR | RNASeqR-package |
| RNASeqReadProcess | RNASeqReadProcess |
| RNASeqReadProcess_CMD | RNASeqReadProcess_CMD |
| RNASeqRParam | RNASeqRParam |
| RNASeqRParam-class | RNASeqR |
| RNASeqRParam-constructor | RNASeqRParam |
| RNASeqRParam_Bam | RNASeqR_Bam |
| RNASeqRParam_Bam-class | RNASeqRParam_Bam |
| RNASeqRParam_Bam-constructor | RNASeqR_Bam |
| RNASeqRParam_Sam | RNASeqR_Sam |
| RNASeqRParam_Sam-class | RNASeqRParam_Sam |
| RNASeqRParam_Sam-constructor | RNASeqR_Sam |
| Update_Fastq_gz | Update_Fastq_gz |
| yeast | Toy RNASeqRParam object |