Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

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Documentation for package ‘DeconRNASeq’ version 1.30.0

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all.datasets data objects for rat liver_brain samples
array.proportions proportions for rat liver and brain mixing samples
array.signatures data objects for rat liver and brain pure samples
condplot Draw the plot of the condition numbers vs. the number of genes in the signature matrix
datasets data objects for liver and kidney mixing samples
decon.bootstrap Estimate the confidence interval for the proportions predicted by deconvolution
DeconRNASeq Function for Deconvolution of Complex Samples from RNA-Seq.
DeconRNASeq.package package DeconRNASeq contains function "DeconRNASeq", implementing the decomposition of RNA-Seq expression profilings of heterogeneous tissues into cell/tissue type specific expression and cell type concentration based on cell-type-specific reference measurements.
DeconRNASeq_package package DeconRNASeq contains function "DeconRNASeq", implementing the decomposition of RNA-Seq expression profilings of heterogeneous tissues into cell/tissue type specific expression and cell type concentration based on cell-type-specific reference measurements.
fraction mixing fractions for multi-tissues mixing samples
liver_kidney data objects for liver and kidney mixing samples
multiplot Draw the plots of proportions of cells determined from deconvolution vs. proportions of the cells actually mixed (when available) with RMSE.
multi_tissue data objects for multi-tissues mixing samples
proportions proportions for liver and kidney mixing samples
rmse Calculate the differences between proportions predicted by deconvolution and the values actually measured
signatures data objects for liver and kidney pure samples
x.data data objects for multi-tissues mixing samples
x.signature data objects for multi-tissues pure samples
x.signature.filtered filtered signatures for multi-tissues pure samples
x.signature.filtered.optimal selected signatures from multi-tissues pure samples