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| BMfinder | Discover bimodal distrubition features |
| getDepth | Get Read Depth |
| getGeneinfo | Get Gene Informaton from a ballgown object |
| rice.bg | Rice Ballgown Object |
| spliceGene | Calculate Splicing Scores for One Gene |
| spliceGenome | Calculate Genome-wide Splicing Scores |
| splicePlot | Gene Splicing Plot |