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| embedCurves | Embed trajectory in new space |
| embedCurves-method | Embed trajectory in new space |
| getCurves | Construct Smooth Lineage Curves |
| getCurves-method | Construct Smooth Lineage Curves |
| getLineages | Infer Lineage Structure from Clustered Samples |
| getLineages-method | Infer Lineage Structure from Clustered Samples |
| lines-method | Plot Slingshot output |
| newSlingshotDataSet | Initialize an object of class 'SlingshotDataSet' |
| newSlingshotDataSet-method | Initialize an object of class 'SlingshotDataSet' |
| pairs-SlingshotDataSet | Pairs plot of Slingshot output |
| pairs.SlingshotDataSet | Pairs plot of Slingshot output |
| plot-method | Plot Slingshot output |
| plot-SlingshotDataSet | Plot Slingshot output |
| plot3d-SlingshotDataSet | Plot Slingshot output in 3D |
| plot3d.SlingshotDataSet | Plot Slingshot output in 3D |
| plotGenePseudotime | Plot Gene Expression by Pseudotime |
| plotGenePseudotime-method | Plot Gene Expression by Pseudotime |
| predict-method | Predict from a Slingshot model |
| reducedDim-method | Class 'SlingshotDataSet' |
| reducedDims-method | Class 'SlingshotDataSet' |
| show-method | Class 'SlingshotDataSet' |
| slingAdjacency | Extract Slingshot adjacency matrix |
| slingAdjacency-method | Extract Slingshot adjacency matrix |
| slingBranchGraph | Construct graph of slingshot branch labels |
| slingBranchGraph-method | Construct graph of slingshot branch labels |
| slingBranchID | Get slingshot branch labels |
| slingBranchID-method | Get slingshot branch labels |
| slingClusterLabels | Extract cluster labels used by Slingshot |
| slingClusterLabels-method | Extract cluster labels used by Slingshot |
| slingCurves | Extract simultaneous principal curves |
| slingCurves-method | Extract simultaneous principal curves |
| slingCurveWeights | Get Slingshot pseudotime values |
| slingCurveWeights-method | Get Slingshot pseudotime values |
| slingLineages | Extract the Slingshot lineages |
| slingLineages-method | Extract the Slingshot lineages |
| slingParams | Methods for parameters used by Slingshot |
| slingParams-method | Methods for parameters used by Slingshot |
| slingPseudotime | Get Slingshot pseudotime values |
| slingPseudotime-method | Get Slingshot pseudotime values |
| slingshot | Perform lineage inference with Slingshot |
| slingshot-method | Perform lineage inference with Slingshot |
| SlingshotDataSet | Extract Slingshot output |
| SlingshotDataSet-class | Class 'SlingshotDataSet' |
| SlingshotDataSet-method | Extract Slingshot output |
| slingshotExample | Bifurcating lineages data |
| [-method | Class 'SlingshotDataSet' |