Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition


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Documentation for package ‘scTensor’ version 1.4.1

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scTensor-package Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition
CCSParams-class Class "CCSParams"
cellCellDecomp Performing scTensor
cellCellDecomp-method Performing scTensor
cellCellRanks Rank estimation of the CCI-tensor
cellCellRanks-method Rank estimation of the CCI-tensor
cellCellReport HTML report of the result of scTensor
cellCellReport-method HTML report of the result of scTensor
cellCellSetting Parameter setting for scTensor
cellCellSetting-method Parameter setting for scTensor
cellCellSimulate Parameter Simulate for scTensor
cellCellSimulate-method Parameter Simulate for scTensor
convertToNCBIGeneID ID conversion function to create the input matrix for scTensor
GermMale The matrix which is used as test data of scTensor.
getParam Get a parameter
getParam-method Get a parameter
labelGermMale The vector contains the celltype information and color scheme of GermMale
m The gene-wise mean vector of Quartz-Seq data.
newCCSParams New Params
scTensor Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition
setParam Set a parameter
setParam-method Set a parameter
setParam<- Set a parameter
setParam<--method Set a parameter
tsneGermMale The result of Rtsne against GermMale
v The gene-wise variance vector of Quartz-Seq data.