scTensor-package | Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition |
CCSParams-class | Class "CCSParams" |
cellCellDecomp | Performing scTensor |
cellCellDecomp-method | Performing scTensor |
cellCellRanks | Rank estimation of the CCI-tensor |
cellCellRanks-method | Rank estimation of the CCI-tensor |
cellCellReport | HTML report of the result of scTensor |
cellCellReport-method | HTML report of the result of scTensor |
cellCellSetting | Parameter setting for scTensor |
cellCellSetting-method | Parameter setting for scTensor |
cellCellSimulate | Parameter Simulate for scTensor |
cellCellSimulate-method | Parameter Simulate for scTensor |
convertToNCBIGeneID | ID conversion function to create the input matrix for scTensor |
GermMale | The matrix which is used as test data of scTensor. |
getParam | Get a parameter |
getParam-method | Get a parameter |
labelGermMale | The vector contains the celltype information and color scheme of GermMale |
m | The gene-wise mean vector of Quartz-Seq data. |
newCCSParams | New Params |
scTensor | Detection of cell-cell interaction from single-cell RNA-seq dataset by tensor decomposition |
setParam | Set a parameter |
setParam-method | Set a parameter |
setParam<- | Set a parameter |
setParam<--method | Set a parameter |
tsneGermMale | The result of Rtsne against GermMale |
v | The gene-wise variance vector of Quartz-Seq data. |