Cell type annotation for unannotated single-cell RNA-Seq data

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Documentation for package ‘scTGIF’ version 1.1.0

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scTGIF-package Cell type annotation for unannotated single-cell RNA-Seq data
calcTGIF Function for connecting cellular patterns and functional patterns using jNMF
calcTGIF-method Function for connecting cellular patterns and functional patterns using jNMF
DistalLungEpithelium Gene expression matrix of DistalLungEpithelium dataset containing five cluster.
label.DistalLungEpithelium Cellular label of DistalLungEpithelium dataset containing five cluster.
pca.DistalLungEpithelium The result of PCA of the DistalLungEpithelium dataset.
reportTGIF Function for reporting the result of 'calcTGIF' function
reportTGIF-method Function for reporting the result of 'calcTGIF' function
scTGIF Cell type annotation for unannotated single-cell RNA-Seq data
settingTGIF Paramter setting for scTGIF
settingTGIF-method Paramter setting for scTGIF