getModel |
Returns the Progeny Model |
model_human_full |
The full human linear model underlying PROGENy |
model_mouse_full |
The full mouse linear model underlying PROGENy |
progeny |
Calculate PROGENy pathway scores from gene expression |
progenyPerm |
This function is designed to compute progeny pathway scores and assesses their significance using a gene sampling-based permutation strategy, for a series of experimental samples/contrasts. |
progenyScatter |
Calculate Progeny Scores with Permutations |
saveProgenyPlots |
Function to save Progeny plots |