Pooling RNA-seq datasets for assembling transcript models

Documentation for package ‘pram’ version 1.3.0

buildModel	Build transcript models from aligned RNA-seq data
defIgRanges	Define intergenic genomic regions
evalModel	Evaluate transcript model
evalModel-method	Evaluate transcript model
prepIgBam	Extract alignments in intergenic regions from BAM files
runPRAM	Predict intergenic transcript models from RNA-seq
selModel	Select transcript models