An mzIdentML parser for R


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Documentation for package ‘mzID’ version 1.25.0

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mzID-package A parser for the mzIdentML file format
as.list.mzIDCollection A class to handle a set of mzID objects
c-method A class to contain data from mzIdentML-files
c-method A class to handle a set of mzID objects
database-method A class to contain data from mzIdentML-files
database-method A class to handle a set of mzID objects
database-method A class to store database information from an mzIdentML file
evidence Getter functions for identification data
evidence-method A class to contain data from mzIdentML-files
evidence-method A class to handle a set of mzID objects
evidence-method A class to store peptide evidence information from an mzIdentML file
files Getter functions for identification data
files-method A class to contain data from mzIdentML-files
files-method A class to handle a set of mzID objects
files-method A Class to store analysis information from the mzIdentML file
flatten Flatten an mzID related class into a table
flatten-method Flatten an mzID related class into a table
id Getter functions for identification data
id-method A class to contain data from mzIdentML-files
id-method A class to handle a set of mzID objects
id-method A class to store psm information from an mzIdentML file
idScanMap Getter functions for identification data
idScanMap-method A class to contain data from mzIdentML-files
idScanMap-method A class to handle a set of mzID objects
idScanMap-method A class to store psm information from an mzIdentML file
length-method A class to contain data from mzIdentML-files
length-method A class to handle a set of mzID objects
length-method A class to store database information from an mzIdentML file
length-method A class to store peptide evidence information from an mzIdentML file
length-method A Class to store analysis information from the mzIdentML file
length-method A class to store peptide information from an mzIdentML file
length-method A class to store psm information from an mzIdentML file
modifications-method A class to contain data from mzIdentML-files
modifications-method A class to handle a set of mzID objects
modifications-method A class to store peptide information from an mzIdentML file
mzID Parse an mzIdentML file
mzID-class A class to contain data from mzIdentML-files
mzID-getters Getter functions for identification data
mzIDCollection Create a new mzIDCollection
mzIDCollection-class A class to handle a set of mzID objects
mzIDdatabase A constructor for the mzIDdatabase class
mzIDdatabase-class A class to store database information from an mzIdentML file
mzIDevidence A constructor for the mzIDevidence class
mzIDevidence-class A class to store peptide evidence information from an mzIdentML file
mzIDparameters A constructor for the mzIDparameters class
mzIDparameters-class A Class to store analysis information from the mzIdentML file
mzIDpeptides A constructor for the mzIDpeptides class
mzIDpeptides-class A class to store peptide information from an mzIdentML file
mzIDpsm A constructor for the mzIDpsm class
mzIDpsm-class A class to store psm information from an mzIdentML file
names-method A class to handle a set of mzID objects
names<--method A class to handle a set of mzID objects
parameters Getter functions for identification data
parameters-method A class to contain data from mzIdentML-files
parameters-method A class to handle a set of mzID objects
parameters-method A Class to store analysis information from the mzIdentML file
peptides-method A class to contain data from mzIdentML-files
peptides-method A class to handle a set of mzID objects
peptides-method A class to store peptide information from an mzIdentML file
removeDecoy Remove decoy identification
removeDecoy-method A class to contain data from mzIdentML-files
removeDecoy-method A class to handle a set of mzID objects
scans-method A class to contain data from mzIdentML-files
scans-method A class to handle a set of mzID objects
scans-method A class to store psm information from an mzIdentML file
show-method A class to contain data from mzIdentML-files
show-method A class to handle a set of mzID objects
show-method A class to store database information from an mzIdentML file
show-method A class to store peptide evidence information from an mzIdentML file
show-method A Class to store analysis information from the mzIdentML file
show-method A class to store peptide information from an mzIdentML file
show-method A class to store psm information from an mzIdentML file
software Getter functions for identification data
software-method A class to contain data from mzIdentML-files
software-method A class to handle a set of mzID objects
software-method A Class to store analysis information from the mzIdentML file
[-method A class to handle a set of mzID objects
[[-method A class to handle a set of mzID objects