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| mzID-package | A parser for the mzIdentML file format |
| as.list.mzIDCollection | A class to handle a set of mzID objects |
| c-method | A class to contain data from mzIdentML-files |
| c-method | A class to handle a set of mzID objects |
| database-method | A class to contain data from mzIdentML-files |
| database-method | A class to handle a set of mzID objects |
| database-method | A class to store database information from an mzIdentML file |
| evidence | Getter functions for identification data |
| evidence-method | A class to contain data from mzIdentML-files |
| evidence-method | A class to handle a set of mzID objects |
| evidence-method | A class to store peptide evidence information from an mzIdentML file |
| files | Getter functions for identification data |
| files-method | A class to contain data from mzIdentML-files |
| files-method | A class to handle a set of mzID objects |
| files-method | A Class to store analysis information from the mzIdentML file |
| flatten | Flatten an mzID related class into a table |
| flatten-method | Flatten an mzID related class into a table |
| id | Getter functions for identification data |
| id-method | A class to contain data from mzIdentML-files |
| id-method | A class to handle a set of mzID objects |
| id-method | A class to store psm information from an mzIdentML file |
| idScanMap | Getter functions for identification data |
| idScanMap-method | A class to contain data from mzIdentML-files |
| idScanMap-method | A class to handle a set of mzID objects |
| idScanMap-method | A class to store psm information from an mzIdentML file |
| length-method | A class to contain data from mzIdentML-files |
| length-method | A class to handle a set of mzID objects |
| length-method | A class to store database information from an mzIdentML file |
| length-method | A class to store peptide evidence information from an mzIdentML file |
| length-method | A Class to store analysis information from the mzIdentML file |
| length-method | A class to store peptide information from an mzIdentML file |
| length-method | A class to store psm information from an mzIdentML file |
| modifications-method | A class to contain data from mzIdentML-files |
| modifications-method | A class to handle a set of mzID objects |
| modifications-method | A class to store peptide information from an mzIdentML file |
| mzID | Parse an mzIdentML file |
| mzID-class | A class to contain data from mzIdentML-files |
| mzID-getters | Getter functions for identification data |
| mzIDCollection | Create a new mzIDCollection |
| mzIDCollection-class | A class to handle a set of mzID objects |
| mzIDdatabase | A constructor for the mzIDdatabase class |
| mzIDdatabase-class | A class to store database information from an mzIdentML file |
| mzIDevidence | A constructor for the mzIDevidence class |
| mzIDevidence-class | A class to store peptide evidence information from an mzIdentML file |
| mzIDparameters | A constructor for the mzIDparameters class |
| mzIDparameters-class | A Class to store analysis information from the mzIdentML file |
| mzIDpeptides | A constructor for the mzIDpeptides class |
| mzIDpeptides-class | A class to store peptide information from an mzIdentML file |
| mzIDpsm | A constructor for the mzIDpsm class |
| mzIDpsm-class | A class to store psm information from an mzIdentML file |
| names-method | A class to handle a set of mzID objects |
| names<--method | A class to handle a set of mzID objects |
| parameters | Getter functions for identification data |
| parameters-method | A class to contain data from mzIdentML-files |
| parameters-method | A class to handle a set of mzID objects |
| parameters-method | A Class to store analysis information from the mzIdentML file |
| peptides-method | A class to contain data from mzIdentML-files |
| peptides-method | A class to handle a set of mzID objects |
| peptides-method | A class to store peptide information from an mzIdentML file |
| removeDecoy | Remove decoy identification |
| removeDecoy-method | A class to contain data from mzIdentML-files |
| removeDecoy-method | A class to handle a set of mzID objects |
| scans-method | A class to contain data from mzIdentML-files |
| scans-method | A class to handle a set of mzID objects |
| scans-method | A class to store psm information from an mzIdentML file |
| show-method | A class to contain data from mzIdentML-files |
| show-method | A class to handle a set of mzID objects |
| show-method | A class to store database information from an mzIdentML file |
| show-method | A class to store peptide evidence information from an mzIdentML file |
| show-method | A Class to store analysis information from the mzIdentML file |
| show-method | A class to store peptide information from an mzIdentML file |
| show-method | A class to store psm information from an mzIdentML file |
| software | Getter functions for identification data |
| software-method | A class to contain data from mzIdentML-files |
| software-method | A class to handle a set of mzID objects |
| software-method | A Class to store analysis information from the mzIdentML file |
| [-method | A class to handle a set of mzID objects |
| [[-method | A class to handle a set of mzID objects |