mzID-package | A parser for the mzIdentML file format |
as.list.mzIDCollection | A class to handle a set of mzID objects |
c-method | A class to contain data from mzIdentML-files |
c-method | A class to handle a set of mzID objects |
database-method | A class to contain data from mzIdentML-files |
database-method | A class to handle a set of mzID objects |
database-method | A class to store database information from an mzIdentML file |
evidence | Getter functions for identification data |
evidence-method | A class to contain data from mzIdentML-files |
evidence-method | A class to handle a set of mzID objects |
evidence-method | A class to store peptide evidence information from an mzIdentML file |
files | Getter functions for identification data |
files-method | A class to contain data from mzIdentML-files |
files-method | A class to handle a set of mzID objects |
files-method | A Class to store analysis information from the mzIdentML file |
flatten | Flatten an mzID related class into a table |
flatten-method | Flatten an mzID related class into a table |
id | Getter functions for identification data |
id-method | A class to contain data from mzIdentML-files |
id-method | A class to handle a set of mzID objects |
id-method | A class to store psm information from an mzIdentML file |
idScanMap | Getter functions for identification data |
idScanMap-method | A class to contain data from mzIdentML-files |
idScanMap-method | A class to handle a set of mzID objects |
idScanMap-method | A class to store psm information from an mzIdentML file |
length-method | A class to contain data from mzIdentML-files |
length-method | A class to handle a set of mzID objects |
length-method | A class to store database information from an mzIdentML file |
length-method | A class to store peptide evidence information from an mzIdentML file |
length-method | A Class to store analysis information from the mzIdentML file |
length-method | A class to store peptide information from an mzIdentML file |
length-method | A class to store psm information from an mzIdentML file |
modifications-method | A class to contain data from mzIdentML-files |
modifications-method | A class to handle a set of mzID objects |
modifications-method | A class to store peptide information from an mzIdentML file |
mzID | Parse an mzIdentML file |
mzID-class | A class to contain data from mzIdentML-files |
mzID-getters | Getter functions for identification data |
mzIDCollection | Create a new mzIDCollection |
mzIDCollection-class | A class to handle a set of mzID objects |
mzIDdatabase | A constructor for the mzIDdatabase class |
mzIDdatabase-class | A class to store database information from an mzIdentML file |
mzIDevidence | A constructor for the mzIDevidence class |
mzIDevidence-class | A class to store peptide evidence information from an mzIdentML file |
mzIDparameters | A constructor for the mzIDparameters class |
mzIDparameters-class | A Class to store analysis information from the mzIdentML file |
mzIDpeptides | A constructor for the mzIDpeptides class |
mzIDpeptides-class | A class to store peptide information from an mzIdentML file |
mzIDpsm | A constructor for the mzIDpsm class |
mzIDpsm-class | A class to store psm information from an mzIdentML file |
names-method | A class to handle a set of mzID objects |
names<--method | A class to handle a set of mzID objects |
parameters | Getter functions for identification data |
parameters-method | A class to contain data from mzIdentML-files |
parameters-method | A class to handle a set of mzID objects |
parameters-method | A Class to store analysis information from the mzIdentML file |
peptides-method | A class to contain data from mzIdentML-files |
peptides-method | A class to handle a set of mzID objects |
peptides-method | A class to store peptide information from an mzIdentML file |
removeDecoy | Remove decoy identification |
removeDecoy-method | A class to contain data from mzIdentML-files |
removeDecoy-method | A class to handle a set of mzID objects |
scans-method | A class to contain data from mzIdentML-files |
scans-method | A class to handle a set of mzID objects |
scans-method | A class to store psm information from an mzIdentML file |
show-method | A class to contain data from mzIdentML-files |
show-method | A class to handle a set of mzID objects |
show-method | A class to store database information from an mzIdentML file |
show-method | A class to store peptide evidence information from an mzIdentML file |
show-method | A Class to store analysis information from the mzIdentML file |
show-method | A class to store peptide information from an mzIdentML file |
show-method | A class to store psm information from an mzIdentML file |
software | Getter functions for identification data |
software-method | A class to contain data from mzIdentML-files |
software-method | A class to handle a set of mzID objects |
software-method | A Class to store analysis information from the mzIdentML file |
[-method | A class to handle a set of mzID objects |
[[-method | A class to handle a set of mzID objects |