Package: methyAnalysis
Type: Package
Title: DNA methylation data analysis and visualization
Version: 1.29.3
Date: 2020-03-25
Depends: R (>= 2.10), grid, BiocGenerics, IRanges, GenomeInfoDb (>=
        1.22.0), GenomicRanges, Biobase (>= 2.34.0), org.Hs.eg.db
Imports: grDevices, stats, utils, lumi, methylumi, Gviz, genoset,
        SummarizedExperiment, IRanges, GenomicRanges,
        VariantAnnotation, rtracklayer, GenomicFeatures, annotate,
        Biobase (>= 2.5.5), AnnotationDbi, genefilter, biomaRt,
        methods, parallel
Suggests: FDb.InfiniumMethylation.hg19,
        TxDb.Hsapiens.UCSC.hg19.knownGene
Author: Pan Du, Richard Bourgon
Maintainer: Lei Huang <lhuang7@uchicago.edu>
Description: The methyAnalysis package aims for the DNA methylation data  
     analysis and visualization. A MethyGenoSet class is defined to keep the 
     chromosome location information together with the data. The package also includes
     functions of estimating the methylation levels from Methy-Seq data.
License: Artistic-2.0
LazyLoad: yes
biocViews: Microarray, DNAMethylation, Visualization
Collate: 'MethyGenoSet-class.R' 'methyAnalysis.R'
        'heatmapByChromosome.R' 'methyl-seq.R'
NeedsCompilation: no
Packaged: 2020-04-08 01:38:41 UTC; biocbuild
git_url: https://git.bioconductor.org/packages/methyAnalysis
git_branch: master
git_last_commit: c4e6184
git_last_commit_date: 2020-03-25
Date/Publication: 2020-04-07
Built: R 4.0.0; ; 2020-04-08 16:57:15 UTC; unix
