A framework for rapid prototyping with file-based data structures

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Documentation for package ‘matter’ version 1.13.10

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A B C D E F H I K L M N O P R S T U V W misc

-- A --

adata Vectors, Matrices, and Arrays Stored in Virtual Memory
adata-method Vectors, Matrices, and Arrays Stored in Virtual Memory
all-method Summary Statistics for "matter" Objects
any-method Summary Statistics for "matter" Objects
apply Apply Functions Over "matter" Matrices
apply-method Apply Functions Over "matter" Matrices
Arith Delayed Operations on "matter" Objects
Arith-method Delayed Operations on "matter" Objects
as.array-method Out-of-Memory Arrays
as.array-method Out-of-Memory Vectors
as.character-method Out-of-Memory Strings
as.character-method Out-of-Memory Vectors
as.data.frame-method Vectors, Matrices, and Arrays Stored in Virtual Memory
as.data.frame-method Out-of-Memory Data Frames
as.factor-method Out-of-Memory Factors
as.integer-method Out-of-Memory Arrays
as.integer-method Out-of-Memory Matrices
as.integer-method Out-of-Memory Vectors
as.list-method Delta Run Length Encoding
as.list-method Vectors, Matrices, and Arrays Stored in Virtual Memory
as.list-method Out-of-Memory Lists of Vectors
as.list-method Virtual Replication of Vectors
as.logical-method Out-of-Memory Arrays
as.logical-method Out-of-Memory Matrices
as.logical-method Out-of-Memory Vectors
as.matrix-method Out-of-Memory Arrays
as.matrix-method Out-of-Memory Matrices
as.matrix-method Out-of-Memory Vectors
as.matrix-method Sparse Matrices
as.matrix-method Virtual Matrices
as.matter Vectors, Matrices, and Arrays Stored in Virtual Memory
as.numeric-method Out-of-Memory Arrays
as.numeric-method Out-of-Memory Matrices
as.numeric-method Out-of-Memory Vectors
as.raw-method Out-of-Memory Arrays
as.raw-method Out-of-Memory Matrices
as.raw-method Out-of-Memory Vectors
as.sparse Sparse Matrices
as.vector-method Delta Run Length Encoding
as.vector-method Out-of-Memory Arrays
as.vector-method Out-of-Memory Matrices
as.vector-method Out-of-Memory Strings
as.vector-method Out-of-Memory Vectors
as.vector-method Virtual Replication of Vectors
as.virtual Virtual Matrices
atomdata Vectors, Matrices, and Arrays Stored in Virtual Memory
atomdata-method Vectors, Matrices, and Arrays Stored in Virtual Memory
atomdata<- Vectors, Matrices, and Arrays Stored in Virtual Memory
atomdata<--method Vectors, Matrices, and Arrays Stored in Virtual Memory

-- B --

bigglm Using "biglm" with "matter"
bigglm-method Using "biglm" with "matter"
biglm Using "biglm" with "matter"
biglm-method Using "biglm" with "matter"
binvec Bin a vector
bsearch Binary Search with Approximate Matching

-- C --

c-method Delta Run Length Encoding
c-method Vectors, Matrices, and Arrays Stored in Virtual Memory
c-method Out-of-Memory Vectors
cbind-method Out-of-Memory Matrices
checksum Calculate Checksums and Cryptographic Hashes
checksum-method Calculate Checksums and Cryptographic Hashes
chunksize Vectors, Matrices, and Arrays Stored in Virtual Memory
chunksize-method Vectors, Matrices, and Arrays Stored in Virtual Memory
chunksize<- Vectors, Matrices, and Arrays Stored in Virtual Memory
chunksize<--method Vectors, Matrices, and Arrays Stored in Virtual Memory
chunk_apply Apply Functions Over Chunks of a List, Vector, or Matrix
chunk_mapply Apply Functions Over Chunks of a List, Vector, or Matrix
class:drle Delta Run Length Encoding
class:matter Vectors, Matrices, and Arrays Stored in Virtual Memory
class:matter_arr Out-of-Memory Arrays
class:matter_df Out-of-Memory Data Frames
class:matter_fc Out-of-Memory Factors
class:matter_list Out-of-Memory Lists of Vectors
class:matter_mat Out-of-Memory Matrices
class:matter_str Out-of-Memory Strings
class:matter_vec Out-of-Memory Vectors
class:rep_vt Virtual Replication of Vectors
class:sparse_mat Sparse Matrices
class:virtual_df Out-of-Memory Data Frames
class:virtual_mat Virtual Matrices
class:virtual_tbl Out-of-Memory Data Frames
colMeans-method Summary Statistics for "matter" Objects
colSds Summary Statistics for "matter" Objects
colSds-method Summary Statistics for "matter" Objects
colStats Row and Column Summary Statistics
colStats-method Row and Column Summary Statistics
colstreamStats Streaming Summary Statistics
colSums-method Summary Statistics for "matter" Objects
colVars Summary Statistics for "matter" Objects
colVars-method Summary Statistics for "matter" Objects
combine Combine Out-of-Memory Objects
combine-method Combine Out-of-Memory Objects
combine-method Delta Run Length Encoding
combine-method Vectors, Matrices, and Arrays Stored in Virtual Memory
combine-method Out-of-Memory Factors
combine-method Out-of-Memory Lists of Vectors
combine-method Out-of-Memory Strings
combine-method Out-of-Memory Vectors
combine-method Streaming Summary Statistics
combiner Get or Set combiner for an Object
combiner-method Sparse Matrices
combiner<- Get or Set combiner for an Object
combiner<--method Sparse Matrices
Compare Delayed Operations on "matter" Objects
Compare-method Delayed Operations on "matter" Objects
crossprod-method Out-of-Memory Matrices

-- D --

datamode Vectors, Matrices, and Arrays Stored in Virtual Memory
datamode-method Vectors, Matrices, and Arrays Stored in Virtual Memory
datamode<- Vectors, Matrices, and Arrays Stored in Virtual Memory
datamode<--method Vectors, Matrices, and Arrays Stored in Virtual Memory
datamode<--method Sparse Matrices
datamode<--method Virtual Matrices
datatypes Data Types for "matter" Objects
dim-method Vectors, Matrices, and Arrays Stored in Virtual Memory
dim-method Out-of-Memory Lists of Vectors
dim<--method Vectors, Matrices, and Arrays Stored in Virtual Memory
dim<--method Out-of-Memory Arrays
dim<--method Out-of-Memory Matrices
dim<--method Out-of-Memory Vectors
dimnames-method Vectors, Matrices, and Arrays Stored in Virtual Memory
dimnames<--method Vectors, Matrices, and Arrays Stored in Virtual Memory
dimnames<--method Out-of-Memory Data Frames
drle Delta Run Length Encoding
drle-class Delta Run Length Encoding

-- E --

exp-method Delayed Operations on "matter" Objects

-- F --

filemode Vectors, Matrices, and Arrays Stored in Virtual Memory
filemode-method Vectors, Matrices, and Arrays Stored in Virtual Memory
filemode<- Vectors, Matrices, and Arrays Stored in Virtual Memory
filemode<--method Vectors, Matrices, and Arrays Stored in Virtual Memory

-- H --

head-method Out-of-Memory Data Frames
hex2raw Universally Unique Identifiers

-- I --

is.drle Delta Run Length Encoding
is.matter Vectors, Matrices, and Arrays Stored in Virtual Memory
is.sparse Sparse Matrices
is.virtual Virtual Matrices

-- K --

keys Get or Set Keys for an Object
keys-method Sparse Matrices
keys<- Get or Set Keys for an Object
keys<--method Sparse Matrices

-- L --

lapply Apply Functions Over "matter" Lists
lapply-method Apply Functions Over "matter" Lists
length-method Delta Run Length Encoding
length-method Vectors, Matrices, and Arrays Stored in Virtual Memory
length-method Virtual Replication of Vectors
length<--method Vectors, Matrices, and Arrays Stored in Virtual Memory
lengths-method Vectors, Matrices, and Arrays Stored in Virtual Memory
lengths-method Out-of-Memory Lists of Vectors
lengths-method Out-of-Memory Strings
levels-method Out-of-Memory Factors
levels<--method Out-of-Memory Factors
locmax Local Maxima
log-method Delayed Operations on "matter" Objects
log10-method Delayed Operations on "matter" Objects
log2-method Delayed Operations on "matter" Objects
Logic Delayed Operations on "matter" Objects
Logic-method Delayed Operations on "matter" Objects

-- M --

matter Vectors, Matrices, and Arrays Stored in Virtual Memory
matter-class Vectors, Matrices, and Arrays Stored in Virtual Memory
matter-datatypes Data Types for "matter" Objects
matter-options Options for "matter" Objects
matter_arr Out-of-Memory Arrays
matter_arr-class Out-of-Memory Arrays
matter_df Out-of-Memory Data Frames
matter_df-class Out-of-Memory Data Frames
matter_fc Out-of-Memory Factors
matter_fc-class Out-of-Memory Factors
matter_list Out-of-Memory Lists of Vectors
matter_list-class Out-of-Memory Lists of Vectors
matter_mat Out-of-Memory Matrices
matter_mat-class Out-of-Memory Matrices
matter_matc Out-of-Memory Matrices
matter_matc-class Out-of-Memory Matrices
matter_matr Out-of-Memory Matrices
matter_matr-class Out-of-Memory Matrices
matter_str Out-of-Memory Strings
matter_str-class Out-of-Memory Strings
matter_vec Out-of-Memory Vectors
matter_vec-class Out-of-Memory Vectors
max-method Summary Statistics for "matter" Objects
mean Summary Statistics for "matter" Objects
mean-method Summary Statistics for "matter" Objects
mem Profile Memory Use
min-method Summary Statistics for "matter" Objects

-- N --

names-method Vectors, Matrices, and Arrays Stored in Virtual Memory
names<--method Vectors, Matrices, and Arrays Stored in Virtual Memory
names<--method Out-of-Memory Data Frames

-- O --

Ops Delayed Operations on "matter" Objects

-- P --

path-method Vectors, Matrices, and Arrays Stored in Virtual Memory
path<--method Vectors, Matrices, and Arrays Stored in Virtual Memory
paths Vectors, Matrices, and Arrays Stored in Virtual Memory
paths-method Vectors, Matrices, and Arrays Stored in Virtual Memory
paths<- Vectors, Matrices, and Arrays Stored in Virtual Memory
paths<--method Vectors, Matrices, and Arrays Stored in Virtual Memory
prcomp Principal Components Analysis for "matter" Matrices
prcomp-method Principal Components Analysis for "matter" Matrices
prod-method Summary Statistics for "matter" Objects
profmem Profile Memory Use
pull Vectors, Matrices, and Arrays Stored in Virtual Memory
push Vectors, Matrices, and Arrays Stored in Virtual Memory

-- R --

range-method Summary Statistics for "matter" Objects
raw2hex Universally Unique Identifiers
rbind-method Out-of-Memory Matrices
readonly Vectors, Matrices, and Arrays Stored in Virtual Memory
readonly-method Vectors, Matrices, and Arrays Stored in Virtual Memory
readonly<- Vectors, Matrices, and Arrays Stored in Virtual Memory
readonly<--method Vectors, Matrices, and Arrays Stored in Virtual Memory
rep_vt Virtual Replication of Vectors
rep_vt-class Virtual Replication of Vectors
rowMeans-method Summary Statistics for "matter" Objects
rowSds Summary Statistics for "matter" Objects
rowSds-method Summary Statistics for "matter" Objects
rowStats Row and Column Summary Statistics
rowStats-method Row and Column Summary Statistics
rowstreamStats Streaming Summary Statistics
rowSums-method Summary Statistics for "matter" Objects
rowVars Summary Statistics for "matter" Objects
rowVars-method Summary Statistics for "matter" Objects

-- S --

sapply Apply Functions Over "matter" Lists
sapply-method Apply Functions Over "matter" Lists
scale Scaling and Centering of "matter" Matrices
scale-method Scaling and Centering of "matter" Matrices
scale.matter Scaling and Centering of "matter" Matrices
sd Summary Statistics for "matter" Objects
sd-method Summary Statistics for "matter" Objects
sparse_mat Sparse Matrices
sparse_mat-class Sparse Matrices
sparse_matc Sparse Matrices
sparse_matc-class Sparse Matrices
sparse_matr Sparse Matrices
sparse_matr-class Sparse Matrices
stat_c Streaming Summary Statistics
stream_stat Streaming Summary Statistics
struct C-Style Structs Stored in Virtual Memory
sum-method Summary Statistics for "matter" Objects
Summary Summary Statistics for "matter" Objects
s_all Streaming Summary Statistics
s_any Streaming Summary Statistics
s_max Streaming Summary Statistics
s_mean Streaming Summary Statistics
s_min Streaming Summary Statistics
s_nnzero Streaming Summary Statistics
s_prod Streaming Summary Statistics
s_range Streaming Summary Statistics
s_sd Streaming Summary Statistics
s_sum Streaming Summary Statistics
s_var Streaming Summary Statistics

-- T --

t-method Out-of-Memory Matrices
t-method Out-of-Memory Vectors
t-method Sparse Matrices
t-method Virtual Matrices
t.matter Out-of-Memory Matrices
tail-method Out-of-Memory Data Frames
tcrossprod-method Out-of-Memory Matrices
tolerance Get or Set Tolerance for an Object
tolerance-method Sparse Matrices
tolerance<- Get or Set Tolerance for an Object
tolerance<--method Sparse Matrices

-- U --

uuid Universally Unique Identifiers

-- V --

var Summary Statistics for "matter" Objects
var-method Summary Statistics for "matter" Objects
virtual_df Out-of-Memory Data Frames
virtual_df-class Out-of-Memory Data Frames
virtual_mat Virtual Matrices
virtual_mat-class Virtual Matrices
virtual_matc Virtual Matrices
virtual_matc-class Virtual Matrices
virtual_matr Virtual Matrices
virtual_matr-class Virtual Matrices
virtual_tbl-class Out-of-Memory Data Frames

-- W --

which-method Vectors, Matrices, and Arrays Stored in Virtual Memory

-- misc --

$-method Out-of-Memory Data Frames
$-method Out-of-Memory Lists of Vectors
$<--method Out-of-Memory Data Frames
$<--method Out-of-Memory Lists of Vectors
%*%-method Out-of-Memory Matrices
%*%-method Sparse Matrices
%*%-method Virtual Matrices
[-method Delta Run Length Encoding
[-method Vectors, Matrices, and Arrays Stored in Virtual Memory
[-method Out-of-Memory Arrays
[-method Out-of-Memory Data Frames
[-method Out-of-Memory Factors
[-method Out-of-Memory Lists of Vectors
[-method Out-of-Memory Matrices
[-method Out-of-Memory Strings
[-method Out-of-Memory Vectors
[-method Virtual Replication of Vectors
[-method Sparse Matrices
[-method Virtual Matrices
[<--method Out-of-Memory Arrays
[<--method Out-of-Memory Data Frames
[<--method Out-of-Memory Factors
[<--method Out-of-Memory Lists of Vectors
[<--method Out-of-Memory Matrices
[<--method Out-of-Memory Strings
[<--method Out-of-Memory Vectors
[<--method Sparse Matrices
[[-method Vectors, Matrices, and Arrays Stored in Virtual Memory
[[-method Out-of-Memory Data Frames
[[-method Out-of-Memory Lists of Vectors
[[-method Virtual Replication of Vectors
[[<--method Out-of-Memory Data Frames
[[<--method Out-of-Memory Lists of Vectors