# Seamless visualization of complex genomic variations in GMOs and edited cell lines

## Documentation for package ‘gmoviz’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

bright_colours_opaque | gmoviz colour sets
bright_colours_transparent | gmoviz colour sets
colourSets | gmoviz colour sets
drawFeatureTrack | Add a 'feature' track to an existing plot
drawLinegraphTrack | Add a line graph track to an existing plot
drawScatterplotTrack | Add a scatterplot track to an existing plot
featureDiagram | Display 'features' of interest in a diagram
getCoverage | Import coverage data from .bam file
getFeatures | Generate a GRanges containing 'features' from .gff files
getIdeogramData | Import transgenic genome data from .bam or .fasta file
getLabels | Generate a GRanges of labels from .gff files
gmovizInitialise | Initialise the layout of the circular plot
gmovizPlot | Generate an entire circular plot
insertionDiagram | Display number of copies of an insertion
makeLegends | Add a legend
multipleInsertionDiagram | Display multiple insertion events around a genome
nice_colours | gmoviz colour sets
pastel_colours | gmoviz colour sets
rich_colours | gmoviz colour sets