A tool for quantification of associations between genotypes and phenotypes in genome wide association studies (GWAS) with Bayesian inference and statistical learning

[Up] [Top]

Documentation for package ‘genphen’ version 1.15.0

Help Pages

dichotomous.phenotype.saap Dichotomous phenotype dataset
genotype.saap SAAP genotype dataset
genotype.saap.msa SAAP genotype dataset (msa)
genotype.snp SNP genotype dataset
genotype.snp.msa SNP genotype dataset (msa)
phenotype.saap Continuous phenotype dataset
phenotype.snp Continuous phenotype dataset
runDiagnostics Data reduction procedure
runGenphen Genetic association analysis using Bayesian inference and statistical learning methods
runPhyloBiasCheck Check for phylogenetic bias