Annotation and analysis of biological dynamical systems using flow cytometry

Documentation for package ‘flowTime’ version 1.11.0

addbs	Add background subtraction to a summary data frame
addnorm	Normalize fluorescence
annotateFlowSet	Annotate a flowSet with experimental metadata
createAnnotation	Create an annotation dataframe
dipdoubletGate	A gate for the set of all diploid doublets
dipsingletGate	A gate for the set of all diploid singlet yeast cells
flsummary	Get summary statistics for fluorescence or other data channels of a flowSet
getTime	Get the time at which at flowFrame began collection
hapdoubletGate	A gate for the set of all haploid doublets
hapsingletGate	A gate for the set of all haploid singlets
loadGates	Load a yeast gate file
ploidy	Guess the ploidy of a given flowframe
polyGate	Create a polygon gate
qaGating	Quality assurance check
read.plateSet	Read FCS files from set of plates
saveGates	Save a yeast gate set
steadyState	Analysis of steady state fluorescence flow cytometry
summarizeFlow	Generate summary statistics for a flowSet
yeastGate	A gate for the set of all yeast cells