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| flowbin-package | function to run the entire flowBin pipeline |
| aml.sample | Multitube AML sample as example data for flowBin |
| amlsample | Multitube AML sample as example data for flowBin |
| bin.labels | A 'FlowSample', but with binning information for each tube |
| bin.labels-method | A 'FlowSample', but with binning information for each tube |
| bin.labels<- | A 'FlowSample', but with binning information for each tube |
| bin.labels<--method | A 'FlowSample', but with binning information for each tube |
| bin.pars | A class similar to flowSet, but with extra information needed by flowBin |
| bin.pars-method | A class similar to flowSet, but with extra information needed by flowBin |
| bin.pars<- | A class similar to flowSet, but with extra information needed by flowBin |
| bin.pars<--method | A class similar to flowSet, but with extra information needed by flowBin |
| BinnedFlowSample | A 'FlowSample', but with binning information for each tube |
| BinnedFlowSample-class | A 'FlowSample', but with binning information for each tube |
| checkQNorm | Function to check the quantile normalisation of a FlowSample using flowFP |
| checkQNorm, | Function to check the quantile normalisation of a FlowSample using flowFP |
| checkQNorm-method | Function to check the quantile normalisation of a FlowSample using flowFP |
| control.tubes | A class similar to flowSet, but with extra information needed by flowBin |
| control.tubes-method | A class similar to flowSet, but with extra information needed by flowBin |
| control.tubes<- | A class similar to flowSet, but with extra information needed by flowBin |
| control.tubes<--method | A class similar to flowSet, but with extra information needed by flowBin |
| eventsInBins | Count number of events for each tube in each bin |
| eventsInBins-method | Count number of events for each tube in each bin |
| flowBin | function to run the entire flowBin pipeline |
| flowFPBin | Bin sample using flowFP binning |
| flowFPBin-method | Bin sample using flowFP binning |
| FlowSample | A class similar to flowSet, but with extra information needed by flowBin |
| FlowSample-class | A class similar to flowSet, but with extra information needed by flowBin |
| getBinExpr | Calculate the expression of each bin in a BinnedFlowSample in terms of the measurement markers |
| getBinExpr-method | Calculate the expression of each bin in a BinnedFlowSample in terms of the measurement markers |
| kMeansBin | Bin sample using K-means binning |
| kMeansBin-method | Bin sample using K-means binning |
| mapBinsKNN | Internal function to map bins by KNN |
| mapBinsKNN-method | Internal function to map bins by KNN |
| measure.pars | A class similar to flowSet, but with extra information needed by flowBin |
| measure.pars-method | A class similar to flowSet, but with extra information needed by flowBin |
| measure.pars<- | A class similar to flowSet, but with extra information needed by flowBin |
| measure.pars<--method | A class similar to flowSet, but with extra information needed by flowBin |
| name | A class similar to flowSet, but with extra information needed by flowBin |
| name-method | A class similar to flowSet, but with extra information needed by flowBin |
| name<- | A class similar to flowSet, but with extra information needed by flowBin |
| name<--method | A class similar to flowSet, but with extra information needed by flowBin |
| quantileNormalise | quantileNormalise normalise binning paramaters across all tubes of a flowSample |
| quantileNormalise-method | quantileNormalise normalise binning paramaters across all tubes of a flowSample |
| removeSparseBins | Remove bins from a BinnedFlowSample with few events in them |
| removeSparseBins-method | Remove bins from a BinnedFlowSample with few events in them |
| show-method | A class similar to flowSet, but with extra information needed by flowBin |
| show-method | Methods to view flowBin objects |
| show-methods | Methods to view flowBin objects |
| tube.set | A class similar to flowSet, but with extra information needed by flowBin |
| tube.set-method | A class similar to flowSet, but with extra information needed by flowBin |
| tube.set<- | A class similar to flowSet, but with extra information needed by flowBin |
| tube.set<--method | A class similar to flowSet, but with extra information needed by flowBin |