call_peaks_with_GLM | Statistical Inference with DESeq package based on the provided reads count for exomic bins. |
estimateSeqDepth | Method estimateSeqDepth |
estimateSeqDepth-method | Method estimateSeqDepth |
estimateSeqDepth-methods | Method estimateSeqDepth |
exomePeak2 | Peak Calling and Peak Statistics Quantification on MeRIP-seq Dataset. |
exomePeak2Results | Method exomePeak2Results |
exomePeak2Results-method | Method exomePeak2Results |
exomePeak2Results-methods | Method exomePeak2Results |
exomePeak2Results<- | Method exomePeak2Results |
exomePeak2Results<--method | Method exomePeak2Results |
exomePeakCalling | Method exomePeakCalling |
exomePeakCalling-method | Method exomePeakCalling |
exomePeakCalling-methods | Method exomePeakCalling |
exonPlot | plot the distribution for the length of the overlapped exons. |
exportResults | Method exportResults |
exportResults-method | Method exportResults |
exportResults-methods | Method exportResults |
GCsizeFactors | Method GCsizeFactors |
GCsizeFactors-method | Method GCsizeFactors |
GCsizeFactors-methods | Method GCsizeFactors |
GCsizeFactors<- | Method GCsizeFactors |
GCsizeFactors<--method | Method GCsizeFactors |
glmDM | Method glmDM |
glmDM-method | Method glmDM |
glmDM-methods | Method glmDM |
glmM | Method glmM |
glmM-method | Method glmM |
glmM-methods | Method glmM |
LibraryType | Method LibraryType |
LibraryType-method | Method LibraryType |
LibraryType-methods | Method LibraryType |
MeripBamFileList | Maintain and use BAM files in MeRIP-Seq experiment |
MeripBamFileList-class | Maintain and use BAM files in MeRIP-Seq experiment |
normalizeGC | Method normalizeGC |
normalizeGC-method | Method normalizeGC |
normalizeGC-methods | Method normalizeGC |
Parameter | Method Parameter |
Parameter-method | Method Parameter |
Parameter-methods | Method Parameter |
plotExonLength | Method plotExonLength |
plotExonLength-method | Method plotExonLength |
plotExonLength-methods | Method plotExonLength |
plotLfcGC | Method plotLfcGC |
plotLfcGC-method | Method plotLfcGC |
plotLfcGC-methods | Method plotLfcGC |
plotReadsGC | Method plotReadsGC |
plotReadsGC-method | Method plotReadsGC |
plotReadsGC-methods | Method plotReadsGC |
plotSizeFactors | Method plotSizeFactors |
plotSizeFactors-method | Method plotSizeFactors |
plotSizeFactors-methods | Method plotSizeFactors |
quiet | Silencing unwanted function output. |
Results | Method Results |
Results-method | Method Results |
Results-methods | Method Results |
scanMeripBAM | Organize the BAM Files Information of a MeRIP-seq Data Set. |
SummarizedExomePeak | SummarizedExomePeak |
SummarizedExomePeak-class | SummarizedExomePeak |