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| call_peaks_with_GLM | Statistical Inference with DESeq package based on the provided reads count for exomic bins. |
| estimateSeqDepth | Method estimateSeqDepth |
| estimateSeqDepth-method | Method estimateSeqDepth |
| estimateSeqDepth-methods | Method estimateSeqDepth |
| exomePeak2 | Peak Calling and Peak Statistics Quantification on MeRIP-seq Dataset. |
| exomePeak2Results | Method exomePeak2Results |
| exomePeak2Results-method | Method exomePeak2Results |
| exomePeak2Results-methods | Method exomePeak2Results |
| exomePeak2Results<- | Method exomePeak2Results |
| exomePeak2Results<--method | Method exomePeak2Results |
| exomePeakCalling | Method exomePeakCalling |
| exomePeakCalling-method | Method exomePeakCalling |
| exomePeakCalling-methods | Method exomePeakCalling |
| exonPlot | plot the distribution for the length of the overlapped exons. |
| exportResults | Method exportResults |
| exportResults-method | Method exportResults |
| exportResults-methods | Method exportResults |
| GCsizeFactors | Method GCsizeFactors |
| GCsizeFactors-method | Method GCsizeFactors |
| GCsizeFactors-methods | Method GCsizeFactors |
| GCsizeFactors<- | Method GCsizeFactors |
| GCsizeFactors<--method | Method GCsizeFactors |
| glmDM | Method glmDM |
| glmDM-method | Method glmDM |
| glmDM-methods | Method glmDM |
| glmM | Method glmM |
| glmM-method | Method glmM |
| glmM-methods | Method glmM |
| LibraryType | Method LibraryType |
| LibraryType-method | Method LibraryType |
| LibraryType-methods | Method LibraryType |
| MeripBamFileList | Maintain and use BAM files in MeRIP-Seq experiment |
| MeripBamFileList-class | Maintain and use BAM files in MeRIP-Seq experiment |
| normalizeGC | Method normalizeGC |
| normalizeGC-method | Method normalizeGC |
| normalizeGC-methods | Method normalizeGC |
| Parameter | Method Parameter |
| Parameter-method | Method Parameter |
| Parameter-methods | Method Parameter |
| plotExonLength | Method plotExonLength |
| plotExonLength-method | Method plotExonLength |
| plotExonLength-methods | Method plotExonLength |
| plotLfcGC | Method plotLfcGC |
| plotLfcGC-method | Method plotLfcGC |
| plotLfcGC-methods | Method plotLfcGC |
| plotReadsGC | Method plotReadsGC |
| plotReadsGC-method | Method plotReadsGC |
| plotReadsGC-methods | Method plotReadsGC |
| plotSizeFactors | Method plotSizeFactors |
| plotSizeFactors-method | Method plotSizeFactors |
| plotSizeFactors-methods | Method plotSizeFactors |
| quiet | Silencing unwanted function output. |
| Results | Method Results |
| Results-method | Method Results |
| Results-methods | Method Results |
| scanMeripBAM | Organize the BAM Files Information of a MeRIP-seq Data Set. |
| SummarizedExomePeak | SummarizedExomePeak |
| SummarizedExomePeak-class | SummarizedExomePeak |