ComputePCOR |
Compute partial correlation coefficient |
GeneExp |
RNA-seq data matrix from GTEx |
InferTFact |
Estimate TF activity score in a sample |
InferTFactPRL |
Estimate TF activity score in different samples |
LimmaFn |
Do differential gene expression/ differential DNA methylation analysis |
LUSCexp |
LUSC RNA-seq dataset |
LUSCmeth |
LUSC DNA methylation dataset |
sepiraInfNet |
Infer tissue-specific regulatory network from gene expression data |
sepiraRegAct |
Infer TF activity from gene expression/ DNA methylation profile |
TFeid |
Transcription factor genes annotated using Entrez gene ID |
VALexp |
RNA-seq data matrix from ProteinAtlas project |