Systems EPigenomics Inference of Regulatory Activity


[Up] [Top]

Documentation for package ‘SEPIRA’ version 1.7.0

Help Pages

ComputePCOR Compute partial correlation coefficient
GeneExp RNA-seq data matrix from GTEx
InferTFact Estimate TF activity score in a sample
InferTFactPRL Estimate TF activity score in different samples
LimmaFn Do differential gene expression/ differential DNA methylation analysis
LUSCexp LUSC RNA-seq dataset
LUSCmeth LUSC DNA methylation dataset
sepiraInfNet Infer tissue-specific regulatory network from gene expression data
sepiraRegAct Infer TF activity from gene expression/ DNA methylation profile
TFeid Transcription factor genes annotated using Entrez gene ID
VALexp RNA-seq data matrix from ProteinAtlas project