A statistical normalization method and differential expression analysis for RNA-seq data between different species

[Up] [Top]

Documentation for package ‘SCBN’ version 1.5.0

Help Pages

generateDataset Generate simulation data for different species
Iter_optimal Iteration to find the optimal value A iteration process to compute the normalization factor to identify difference expression(DE) of genes between different species
MediancalcNorm Iteration to find the optimal value A iteration process to compute the normalization factor to identify difference expression(DE) of genes between different species
orthgenes A real dataset of orthologous genes between the different species.
sageTestNew Iteration to find the optimal value A iteration process to compute the normalization factor to identify difference expression(DE) of genes between different species
SCBN Compute the normalization factor to identify difference expression (DE) of genes between different species
sim_data A simulation dataset of orthologous genes between the different species.