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| Rariant-package | Rariant package |
| acCi | Confidence Interval Functions |
| baseFillScale | Rariant color scales |
| callConsensus | Tally processing low-level functions |
| ciAdjustLevel | CI Adjust |
| ciCovers | CI Utils |
| ciOutside | CI Utils |
| ciOverlap | CI Utils |
| ciWidth | CI Utils |
| coverageProbability | Assessment of CI methods |
| eventFillScale | Rariant color scales |
| evidenceHeatmap | Variant Evidence Heatmap |
| feTest | Testing Functions |
| filterCalls | Multi call processing |
| findCalls | Multi call processing |
| gr2pos | Position converters |
| mergeCalls | Multi call processing |
| mismatchCount | Tally processing low-level functions |
| mismatchUtils | Tally processing low-level functions |
| nhsCi | Confidence Interval Functions |
| nmTest | Testing Functions |
| plotAbundanceShift | Plotting Functions |
| plotCIs | Plotting Functions |
| plotConfidenceIntervals | Plotting Functions |
| pos2gr | Position converters |
| propCIs | Confidence Interval Functions |
| propTests | Testing Functions |
| Rariant | Rariant package |
| rariant | Rariant calling functions |
| rariant-method | Rariant calling functions |
| rariant-methods | Rariant calling functions |
| rariantInspect | Interactive inspection |
| rariantStandalone | Rariant calling functions |
| rateFillScale | Rariant color scales |
| readRariant | Rariant calling functions |
| scoreTest | Testing Functions |
| selectStrand | Tally processing low-level functions |
| seqDepth | Tally processing low-level functions |
| splitSample | Split Sample for Binomial Data |
| splitSampleBinom | Split Sample for Binomial Data |
| tallyBamRegion | Tally a genomic region |
| tallyPlot | Mismatch plot from BAM files |
| updateCalls | Multi call processing |
| verdictColorScale | Rariant color scales |
| writeRariant | Rariant calling functions |
| yesNoMaybe | Determine Variant Evidence |