![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
| .getSimulation_test | Auxiliary function for the test method |
| .query_pubmed | #' .query_pubmed |
| all_counts | all_counts |
| gene2pubmed_db | human genes on gene2pubmed_db |
| getScore | Retrieve the literature_score attribute |
| getScore-method | Retrieve the literature_score attribute |
| get_all_counts | Retrieve the all_counts attribute |
| get_all_counts-method | Retrieve the all_counts attribute |
| get_literature_score | get_literature_score |
| heatmapViz | Retrieve the heatmap attribute |
| heatmapViz-method | Retrieve the heatmap attribute |
| hgcn_entrez_reference | hgcn_entrez_reference |
| initialize-method | initialize |
| networkViz | Retrieve the network attribute |
| networkViz-method | Retrieve the network attribute |
| plot_literature_graph | #'plot_literature_graph |
| plot_literature_score | plot_literature_score |
| pubscore | PubScore fundamental analysis |
| PubScore-class | An S4 class to represent PubScore results |
| set_all_counts<- | Set the all_counts attribute |
| set_all_counts<--method | Set the all_counts attribute |
| test_score | Test the literature enrichment score |
| test_score-method | Test the literature enrichment score |