.convertPsetMolecularProfilesToSE	dot-convertPsetMolecularProfilesToSE
.PharmacoSet	PharmacoSet-class
.resaveAllExampleDatasets	dot-resaveAllExampleDatasets
.validatePsetMolecularProfilesToSEConversion	dot-validatePsetMolecularProfilesToSEConversion
amcc	amcc
availablePSets	availablePSets
callingWaterfall	callingWaterfall
CCLEsmall	CCLEsmall
cellInfo,PharmacoSet-method	PharmacoSet-class
cellInfo<-,PharmacoSet,data.frame-method	cellInfo-set-PharmacoSet-data.frame-method
cellNames,PharmacoSet-method	PharmacoSet-class
cellNames<-,PharmacoSet,character-method	PharmacoSet-class
checkPsetStructure	checkPsetStructure
CMAPsmall	CMAPsmall
computeABC	computeABC
computeAmax	computeAmax
computeAUC	computeAUC
computeIC50	computeICn
computeICn	computeICn
computeSlope	computeSlope
connectivityScore	connectivityScore
cosinePerm	cosinePerm
dateCreated,PharmacoSet-method	PharmacoSet-class
dim,PharmacoSet-method	dim-PharmacoSet-method
downloadPertSig	downloadPertSig
downloadPSet	downloadPSet
drugDoseResponseCurve	drugDoseResponseCurve
drugInfo	drugInfo
drugInfo,PharmacoSet-method	PharmacoSet-class
drugInfo<-	drugInfo-set
drugInfo<-,PharmacoSet,data.frame-method	PharmacoSet-class
drugNames	drugNames
drugNames,PharmacoSet-method	PharmacoSet-class
drugNames<-	drugNames-set
drugNames<-,PharmacoSet,character-method	PharmacoSet-class
drugPerturbationSig	drugPerturbationSig
drugSensitivitySig	drugSensitivitySig
featureInfo,PharmacoSet-method	PharmacoSet-class
featureInfo<-,PharmacoSet,character,DataFrame-method	PharmacoSet-class
filterNoisyCurves	filterNoisyCurves
fNames,PharmacoSet,character-method	PharmacoSet-class
fNames<-,PharmacoSet,character,character-method	fNames-set-PharmacoSet-character-character-method
GDSCsmall	GDSCsmall
geneDrugSensitivity	geneDrugSensitivity
gwc	gwc
HDAC_genes	HDAC_genes
intersectPSet	intersectPSet
logLogisticRegression	logLogisticRegression
mcc	mcc
mDataNames,PharmacoSet-method	mDataNames-PharmacoSet-method
molecularProfiles,PharmacoSet-method	PharmacoSet-class
molecularProfiles<-,PharmacoSet,character,character,matrix-method	PharmacoSet-class
molecularProfiles<-,PharmacoSet,character,missing,matrix-method	PharmacoSet-class
name,PharmacoSet-method	PharmacoSet-class
pertNumber,PharmacoSet-method	PharmacoSet-class
pertNumber<-,PharmacoSet,array-method	PharmacoSet-class
PharmacoSet	PharmacoSet
PharmacoSet-class	PharmacoSet-class
phenoInfo,PharmacoSet-method	PharmacoSet-class
phenoInfo<-,PharmacoSet,character,DataFrame-method	PharmacoSet-class
plot.PharmacoSig	plot.PharmacoSig
sensitivityInfo,PharmacoSet-method	PharmacoSet-class
sensitivityInfo<-,PharmacoSet,data.frame-method	PharmacoSet-class
sensitivityMeasures,PharmacoSet-method	PharmacoSet-class
sensitivityProfiles,PharmacoSet-method	PharmacoSet-class
sensitivityProfiles<-,PharmacoSet,data.frame-method	PharmacoSet-class
sensitivityProfiles<-,PharmacoSet,matrix-method	PharmacoSet-class
sensNumber,PharmacoSet-method	PharmacoSet-class
sensNumber<-,PharmacoSet,matrix-method	PharmacoSet-class
show,PharmacoSet-method	show-PharmacoSet-method
show,PharmacoSig-method	show-PharmacoSig-method
showSigAnnot	showSigAnnot
subsetTo	subsetTo
summarizeMolecularProfiles	summarizeMolecularProfiles
summarizeSensitivityProfiles	summarizeSensitivityProfiles
[,PharmacoSet,ANY,ANY,ANY-method	sub-PharmacoSet-ANY-ANY-ANY-method
