Package: PharmacoGx
Type: Package
Title: Analysis of Large-Scale Pharmacogenomic Data
Version: 2.0.0
Date: 2020-04-23
Author: Petr Smirnov, Zhaleh Safikhani, Christopher Eeles, Mark Freeman, Benjamin Haibe-Kains
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
Description: Contains a set of functions to perform large-scale analysis of pharmacogenomic data.
License: Artistic-2.0
Suggests: pander, rmarkdown, knitr, knitcitations
Encoding: UTF-8
Imports: Biobase, S4Vectors, SummarizedExperiment, BiocParallel,
        ggplot2, magicaxis, RColorBrewer, parallel, caTools, methods,
        downloader, stats, utils, graphics, grDevices, reshape2,
        testthat, jsonlite
Depends: R (>= 3.6), CoreGx
RoxygenNote: 7.1.0
VignetteBuilder: knitr
biocViews: GeneExpression, Pharmacogenetics, Pharmacogenomics,
        Software, Classification
BugReports: https://github.com/bhklab/PharmacoGx/issues
Collate: 'AdaptiveMatthewCor.R' 'ComputeGR.R' 'GR.R' 'GWC.R'
        'LogLogisticRegression.R' 'MatthewCor.R' 'PharmacoSetClass.R'
        'SanityCheck.R' 'callingWaterfall.R' 'computeABC.R'
        'computeAUC.R' 'computeAUC_old.R' 'computeAmax.R'
        'computeDSS.R' 'computeDrugSensitivity.R' 'computeIC50.R'
        'computeICn.R' 'computeSlope.R' 'connectivityScore.R'
        'cosinePerm.R' 'datasets.R' 'downloadPSet.R'
        'downloadSignatures.R' 'drugDoseResponseCurve.R'
        'drugPerturbationSig.R' 'drugSensitivitySig.R'
        'filterNoisyCurves.R' 'geneDrugPerturbation.R'
        'geneDrugSensitivity.R' 'getRawSensitivityMatrix.R' 'globals.R'
        'intersectPSets.R' 'signatureClass.R' 'plotPSig.R'
        'rankGeneDrugPerturbation.R' 'rankGeneDrugSensitivity.R'
        'summarizeMolecularProfiles.R' 'summarizeSensitivityProfiles.R'
        'utilities.R'
git_url: https://git.bioconductor.org/packages/PharmacoGx
git_branch: RELEASE_3_11
git_last_commit: 7846a93
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: no
Packaged: 2020-04-28 02:31:23 UTC; biocbuild
Built: R 4.0.0; ; 2020-04-28 13:43:39 UTC; unix
