MODA: MOdule Differential Analysis for weighted gene co-expression network

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Documentation for package ‘MODA’ version 1.13.0

Help Pages

CompareAllNets Illustration of network comparison
comparemodulestwonets Illustration of two networks comparison
datExpr1 datExpr1
datExpr2 datExpr2
getPartition Get numeric partition from folder
MIcondition Modules detection by each condition
ModuleFrequency Statistics of all conditions
modulesRank Modules rank from recursive communities detection
NMImatrix Illustration of network comparison by NMI
PartitionDensity Illustration of partition density
PartitionModularity Illustration of modularity density
recursiveigraph Modules identification by recursive community detection
WeightedModulePartitionAmoutain Modules detection by AMOUNTAIN algorithm
WeightedModulePartitionHierarchical Modules detection by hierarchical clustering
WeightedModulePartitionLouvain Modules detection by Louvain algorithm
WeightedModulePartitionSpectral Modules detection by spectral clustering