MLP

Documentation for package ‘MLP’ version 1.35.0

addGeneSetDescription	Utility function which adds the biological description of the gene sets as a column to the return value of the MLP function (data frame)
getGeneSets	Prepare Pathway Data for the MLP Function
MLP	This function calculates p-values for each gene set based on row permutations of the gene p values or column permutations of the expression matrix; the p values can be obtained either as individual gene set p values or p values based on smoothing across gene sets of similar size.
mlpBarplot	Draw a Barplot for MLP Results
plot.MLP	Plot the Results of an MLP Run
plotGeneSetSignificance	Plot the Significance for the Genes of a Given Gene Set
plotGOgraph	Graphical Representation of GO Based MLP Results