GCSscore: an R package for microarray analysis for Affymetrix/Thermo Fisher arrays

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Documentation for package ‘GCSscore’ version 1.1.6

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calcSF calculates Scaling Factor (SF) values
computeSscore Computes GCS-score values
GCSscore Main GCS-score Function
get3primeIVTprobefileData Read a data file describing the probe sequences on an Affymetrix genechip
getClariomSprobefileData Read a data file describing the probe sequences on an Affymetrix genechip
getXTAprobefileData Read a data file describing the probe sequences on an Affymetrix genechip
mismatch Calculates mismatch values for probes
normalize Normalization of GCS-score values
rawScore Calculates the rawScore values
zoneRQ Calculates the zone-based RawQ values