Improving replicability in single-cell RNA-Seq cell type discovery

Documentation for package ‘Dune’ version 0.99.15

.adjustedRandIndex	adjustedRandIndex
ARIEvolution	Plot the evolution of the pairwise ARIs as merging happens
ARIImp	ARI improvement
ARIs	ARI Matrix
ARItrend	ARI improvement plot
clusMat	A clustering matrix used to demonstrate the ari-merging process.
clusterConversion	clusterConversion
ConfusionEvolution	Plot the evolution of the ConfusionPlot as merging happens
ConfusionPlot	Plot confusion matrix
Dune	Dune
Dune-method	Dune
functionTracking	Track the evolution of a function along merging
intermediateMat	Find the clustering matrix that we would get if we stopped the ARI merging early
nuclei	Cluster labels for a subset of the allen Smart-Seq nuclei dataset
plotARIs	Plot an heatmap of the ARI matrix
plotPrePost	Plot the reduction in cluster size for an ARI merging with 'Dune'
whenToStop	When to Stop