Changes in version 0.99.27 (2019-10-22)
  * Use tempdir() in test to avoid using home dir of bioconductor build machine

Changes in version 0.99.26 (2019-09-23)
  * Use tempdir() in examples and vignette to prevent from contaminating Bioc and users' machine

Changes in version 0.99.24 (2019-09-23)
  * Update source code for robustness

Changes in version 0.99.23 (2019-09-14)
  * Add support for type SummarizedExperiment in function predictor()
  * Fix output directory problem in main function
  * Remove some unused functions

Changes in version 0.99.22 (2019-09-06)
  * Fix bugs by removing lazy load

Changes in version 0.99.21 (2019-09-06)
  * Add overwrite function for main function
  * Optimize packages suggested checking

Changes in version 0.99.20 (2019-07-30)
  * Fix predictor() error by complete cases

Changes in version 0.99.19 (2019-07-29)
  * Fix m.f.s bug when calculating centroid of new matrix

Changes in version 0.99.18 (2019-07-29)
  * Add a choice for using kmeans() for super-clustering

Changes in version 0.99.17 (2019-07-29)
  * Add a parameter allowing keep rows with no variance
  * List for centroid2exp() should not be filtered by variance

Changes in version 0.99.16 (2019-07-29)
  * CrossICC now need R version >= 3.5
  * Update ssGSEA function

Changes in version 0.99.15 (2019-07-28)
  * CrossICC now need R version >= 3.6
  * Fix NAMESPACE bug

Changes in version 0.99.14 (2019-07-28)
  * Update vignette and man pages

Changes in version 0.99.13 (2019-07-28)
  * Update vignette and man pages

Changes in version 0.99.12 (2019-07-28)
  * Fix ssGSEA() bug
  * Remove external shiny calling function
  * CrossICC() can reset working directory to previous one now

Changes in version 0.99.11 (2019-07-28)
  * Add sankey plot to shiny app
  * Optimize the main function

Changes in version 0.99.10 (2019-07-27)
  * Update ssGSEA man page

Changes in version 0.99.9 (2019-07-27)
  * Label ssGSEA examples as donttest

Changes in version 0.99.8 (2019-07-27)
  * Update help page of function CrossICCInput(): example should contain file name pattern

Changes in version 0.99.7 (2019-07-26)
  * Update man pages

Changes in version 0.99.6 (2019-07-26)
  * Use all functions in reloaded MergeMaid code
  * To test all examples in exported function

Changes in version 0.99.5 (2019-07-26)
  * Turn off default shiny calling

Changes in version 0.99.4 (2019-07-26)
  * Update some man pages

Changes in version 0.99.3 (2019-07-26)
  * Update examples for most functions
  * Remove random seed of ConcensusClusterPlus function

Changes in version 0.99.2 (2019-07-25)
  * Fix some mistakes in Rd files

Changes in version 0.99.1 (2019-07-25)
  * Main function CrossICC will not use shiny app by default
  * Add sankey plot
  * Remove some default dependencies (only needed when use shiny)
  * Fix some check error and warnings

Changes in version 0.1.1 (2019-06-25)
  * Update vignette and some man pages for functions

Changes in version 0.1.0 (2019-06-25)
  * The first version of CrossICC
  * Submitted to Bioconductor
