Classes and Functions to Serve as the Basis for Other 'Gx' Packages

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Documentation for package ‘CoreGx’ version 1.0.0

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.CoreSet A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
.getSupportVec .getSupportVec
amcc Calculate an Adaptive Matthews Correlation Coefficient
cellInfo cellInfo Getter
cellInfo-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
cellInfo<- cellInfo<- Generic
cellInfo<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
cellNames cellNames Generic
cellNames-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
cellNames<- cellNames<- Generic
cellNames<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
checkCsetStructure A function to verify the structure of a CoreSet
clevelandSmall_cSet Cleaveland_mut RadioSet subsetted and cast as CoreSet
connectivityScore Function computing connectivity scores between two signatures
CoreSet CoreSet constructor
CoreSet-class A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
cosinePerm Cosine Permutations
dateCreated dateCreated Generic
dateCreated-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
featureInfo featureInfo Generic
featureInfo-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
featureInfo<- featureInfo<- Generic
featureInfo<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
fNames fNames Generic
fNames-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
fNames<- fNames<- Generic
fNames<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
gwc GWC Score
mcc Compute a Mathews Correlation Coefficient
mDataNames mDataNames Generic
mDataNames-method mDataNames
molecularProfiles molecularProfiles Generic
molecularProfiles-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
molecularProfiles<- molecularProfiles<- Generic
molecularProfiles<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
molecularProfilesSlot molecularProfilesSlot Generic
molecularProfilesSlot-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
molecularProfilesSlot<- molecularProfilesSlot<-
molecularProfilesSlot<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
name name Generic
name-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
pertNumber pertNumber Generic
pertNumber-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
pertNumber<- pertNumber<- Generic
pertNumber<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
phenoInfo phenoInfo Generic
phenoInfo-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
phenoInfo<- phenoInfo<- Generic
phenoInfo<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensitivityInfo sensitivityInfo Generic
sensitivityInfo-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensitivityInfo<- sensitivityInfo<- Generic
sensitivityInfo<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensitivityMeasures sensitivityMeasures Generi
sensitivityMeasures-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensitivityProfiles sensitivityProfiles Generic
sensitivityProfiles-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensitivityProfiles<- sensitivityProfiles<- Generic
sensitivityProfiles<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensNumber sensNumber Generic
sensNumber-method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
sensNumber<- sensNumber<- Generic
sensNumber<--method A Superclass to Contain Data for Genetic Profiling and Viability Screens of Cancer Cell Lines
show-method Show a CoreSet