Package: BgeeCall
Type: Package
Title: Automatic RNA-Seq present/absent gene expression calls
        generation
Version: 1.3.1
Date: 2019-03
Authors@R: 
	c(person("Julien", "Wollbrett", 
		role = c("aut", "cre"), 
		email = "julien.wollbrett@unil.ch"),
    person("Julien", "Roux", role = "aut"),
    person("Sara", "Fonseca Costa", role = "ctb"),
    person("Marc", "Robinson Rechavi", role = "ctb"),
    person("Frederic", "Bastian", role = "aut"))
Description: Reference intergenic regions are generated by the Bgee RNA-Seq pipeline. These intergenic regions are used 
    to generate all Bgee RNA-Seq present/absent expression calls. BgeeCall now allows to generate present/absent 
    calls for any RNA-Seq library as long as reference intergenic sequences have been generated for the corresponding species. The 
    threshold of present/absent expression is no longer arbitrary defined but is calculated based on expression of all RNA-Seq 
    libraries integrated in Bgee.
Depends: R (>= 4.0)
Imports: GenomicFeatures, rhdf5, tximport, Biostrings, rtracklayer,
        biomaRt, jsonlite, methods, grDevices, graphics, stats, utils
License: GPL-3
URL: https://github.com/BgeeDB/BgeeCall
BugReports: https://github.com/BgeeDB/BgeeCall/issues
VignetteBuilder: knitr
biocViews: Software, GeneExpression, RNASeq
Suggests: knitr, testthat, rmarkdown, AnnotationHub, httr
RoxygenNote: 7.0.2
Encoding: UTF-8
NeedsCompilation: no
SystemRequirements: kallisto
git_url: https://git.bioconductor.org/packages/BgeeCall
git_branch: master
git_last_commit: efd6a68
git_last_commit_date: 2020-04-07
Date/Publication: 2020-04-07
Packaged: 2020-04-08 05:15:19 UTC; biocbuild
Author: Julien Wollbrett [aut, cre],
  Julien Roux [aut],
  Sara Fonseca Costa [ctb],
  Marc Robinson Rechavi [ctb],
  Frederic Bastian [aut]
Maintainer: Julien Wollbrett <julien.wollbrett@unil.ch>
Built: R 4.0.0; ; 2020-04-08 18:26:49 UTC; unix
