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| plotConjoint | Create conjoint plots |
| plotLinear | Plot linear model for sequins |
| plotLOD | Create Limit-of-Detection Ratio (LOD) plot |
| plotLogistic | Plot logistic model for sequins |
| plotROC | Create ROC plot |
| RnaQuinGeneMixture | RnaQuin mixture (gene level) |
| RnaQuinIsoformMixture | RnaQuin mixture (isoform level) |
| UserGuideData_5.4.5.1 | Section 5.4.5.1 Assembly Dataset |
| UserGuideData_5.4.6.3 | Gene expression (RnaQuin) |
| UserGuideData_5.6.3 | Differential expression (RnaQuin) |