Affinity Network Fusion for Complex Patient Clustering

Documentation for package ‘ANF’ version 1.9.0

affinity_matrix	Generate a symmetric affinity matrix based on a distance matrix using 'local' Gaussian kernel
ANF	Fuse affinity networks (i.e., matrices) through one-step or two-step random walk
eval_clu	Evaluate clustering result
kNN_graph	Calculate k-nearest-neighbor graph from affinity matrix and normalize it as transition matrix
pod	Finding optimal discrete solutions for spectral clustering
spectral_clustering	spectral_clustering